DreINT0000135 @ danRer10
Intron Retention
Gene
ENSDARG00000074221 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr11:5651945-5653692:+
Coord C1 exon
chr11:5651945-5652037
Coord A exon
chr11:5652038-5653454
Coord C2 exon
chr11:5653455-5653692
Length
1417 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGC
5' ss Score
6.16
3' ss Seq
ATTCTATTTTTCCTCCTCAGATC
3' ss Score
11.06
Exon sequences
Seq C1 exon
AGAGACAGGCTGCAGGCAAATGCAGCTGATTTCCGGATCATCAGTCGGGCTGTGTCCTCTGCTTCTCAGGAACTGGCATCAATTATGGATGAT
Seq A exon
GTAAGCAGTTTATAGATCTTTTAAAGTGTTAGCTGACCCAAATATAAAAGTTCTGTCAATAATTACTCACTCTTATGTCATTCCAAACTTCCGATACCTTTGTTCATCTTTAGAACCCAAAATCCGAGAACTCCCTTATCCTCCATAGACAGCAATAGTCCTGACTTGTTCAAAGTCCAGTGAAGTTTCGAAAAACCTCCTCAAAGCTGTTCATGTGGTTTCCGCATTTCAATCAGAGTTTTATTAAGCTACTAGAATACTTTTGTCTGCACATAAAGCAAAACAACAACAGTTTTTTCTCATCAGTGTCAGTATAGAGCAGTGGTCACCAAACTTGTTCCTGGAGGGCCGGTGTCCTGCAGATTTTAGCTCAAACCCTAATCAAACACACCTGAACAAGCTAATCAAGGTCTTACTAGGTATACTTGAAACATCCAGGCCGTTGTGTTGAGGCAAATTGGACCTAAACCCTACAGGGACACCGGCCCTCCAGGACCGAGATTAGTGACCCCTGGTATAGAGCATGTGTTCTACGGCTTTGTGTACTGAGGTGTACGTGTGTGACTTTAAAAGGGCTGTGTTTGGCGAATGTGAGGTATATGTCAGCAGGATGACAGAACGCGACACTCATAGTGAACACAGTGCTCTTGTGAAACATGCACCCTATACTAACACTGGGAAGAAGAAACTATTGAATGATGTCCTTGATTTTGTTTTATGTGTGCACATAAGTATTCTTAGAGCTTGATAATATTCCGATTTATCCATTGAAGACTTCTTGTCTTCAGTTGTAAGAGCAAGAAATAATCACTTGACTTCTAGTTGATCATTTGGAAAAGTGGCAGAAGGTAGATATTTCAGATAAAACATCTGTTAAACTGCATCCCAATCATCACAAATACTGCTGAAGACTTATTGGAACCAGCATGGACCCAAGATTCTTACAGAAATCAGTCAAGTTTGGTGAAGGAAAAATCATGGTTTGGGGTTACATTCAGAATAGGGACATGTGAGAGATCTGCAGAGTGAACTGCCAACTTGTCCGGAATAGGTTTTACACAGTGGATGCTCTTCCAGCTGCAACCCATCACTGGGAAGCATCCGTACACACTCAAACTATGGTCAATTTAGCTTACCCAATTCACCTGTACCGGATGTCTTTGGACTTGTGGGGGAAACCGCAGCACCCGTAGGAAACCCATGCGAACACGGGGAGAACATGCAAACTCCACACAAAAATGCCAATTGACCCAGCCGAGGCTTGAACCAGCGACCTTCTCGCTGTGAGGCATTTGTGCTACCCACTGGGCTAGCGTGACGCCCTTGATGAGGATTATACAAAATATGATGATGCAGGCATAATAAAAGTCAATTTTCACATCACACCAATCAATTTTATTCTATTTTTCCTCCTCAG
Seq C2 exon
ATCTCTTCTCTGTCCAGTTTCTCAGAGCTGAACTCAGAGATAAGGCTTCTAACACCTGAAAACCGCTCGGTACTGCCACGCGAGAGCTTTCGAGCCTTCTCCAGAATCATGTGTGGACACCCAGAGGCAGGAGGAGAGAGAATCCCTTCATTCAACTGGTATGAAGATCAGGACATCAAATCTTTTCTGGGCAGAAACGCATCAGAGGAGACAAGTCTTGAAAATGACAACAGCACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074221:ENSDART00000165385:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.062
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACAGGCTGCAGGCAAAT
R:
TGGTGCTGTTGTCATTTTCAAGAC
Band lengths:
330-1747
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]