DreINT0000136 @ danRer10
Intron Retention
Gene
ENSDARG00000074221 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr11:5653455-5653967:+
Coord C1 exon
chr11:5653455-5653692
Coord A exon
chr11:5653693-5653827
Coord C2 exon
chr11:5653828-5653967
Length
135 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGA
5' ss Score
5.9
3' ss Seq
GCCTGATTTTTGTCCTTTAGCTT
3' ss Score
7.92
Exon sequences
Seq C1 exon
ATCTCTTCTCTGTCCAGTTTCTCAGAGCTGAACTCAGAGATAAGGCTTCTAACACCTGAAAACCGCTCGGTACTGCCACGCGAGAGCTTTCGAGCCTTCTCCAGAATCATGTGTGGACACCCAGAGGCAGGAGGAGAGAGAATCCCTTCATTCAACTGGTATGAAGATCAGGACATCAAATCTTTTCTGGGCAGAAACGCATCAGAGGAGACAAGTCTTGAAAATGACAACAGCACCA
Seq A exon
GTAAGATATCATTGCTTTATTAAAAGGTCAAAGCAGATTCCTGTTTGCCCCATATTTGTGCCATTAGTAGTAACTGTAACTATACCCTACCAACAGTTTTTTTTATCTTAATAATGCCTGATTTTTGTCCTTTAG
Seq C2 exon
CTTCATTCTGTGAAAACTTGATCCAAAATCTGGAGTCGAACCCTCTGTCACGGATTGTATGGCGTGGCATCAAACCACTGTTCATTGGAAAGCTGCTGTACACACCAGACACGCCAATCACTCGCACAATCATGTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074221:ENSDART00000165385:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=NA C2=0.021
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAACACCTGAAAACCGCTCGG
R:
CAATCCGTGACAGAGGGTTCG
Band lengths:
246-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]