BtaINT0011248 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006896 | ABCA9
Description
ATP-binding cassette, sub-family A (ABC1), member 9 [Source:HGNC Symbol;Acc:HGNC:39]
Coordinates
chr19:62149749-62150171:+
Coord C1 exon
chr19:62149749-62149868
Coord A exon
chr19:62149869-62150030
Coord C2 exon
chr19:62150031-62150171
Length
162 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
GACCCTCCTCTCACCTCCAGGTG
3' ss Score
12.48
Exon sequences
Seq C1 exon
GCAGCTGATCCGGGCCTCCGTTAGAAACACGGCGAGGGGCGCCCTGCTGACCACCCACTCCATGGCCGAGGCGGAGGCCGTGTGCGACCGCGTGGCCGTCATGGTGTCCGGGAGCCTGAG
Seq A exon
GTGGGTGGGTCCCCGGGCGCGCTCTGAGTGAGGGCATCTCCCCGACACGGTGGTCTCTGCGTGGAGCTGGGCTGGCCGGCTGCCCTGGTCCCAGGACCCCGTGTCCCCAGCGGTGGGTTTCCCCTCGCTTCCCCTGCCGGCTGACCCTCCTCTCACCTCCAG
Seq C2 exon
GTGTATCGGCTCCATCCAGCATCTGAAGAGCAAGTTCGGCAGAGACTACCTGCTGGAGATGAAGCTGAAGAGCCTGGCCCGGCTGGAGGCTCTGCACGCCGAGGTCCTGAGGATCTTCCCCCAGGCTGCTCGGCAAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006896:ENSBTAT00000009067:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCGTTAGAAACACGGCGAG
R:
TCTCTTGCCGAGCAGCCT
Band lengths:
245-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development