BtaINT0012132 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015026 | ABL2
Description
ABL proto-oncogene 2, non-receptor tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:77]
Coordinates
chr16:61902941-61904056:-
Coord C1 exon
chr16:61903904-61904056
Coord A exon
chr16:61903031-61903903
Coord C2 exon
chr16:61902941-61903030
Length
873 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
CTTCTCTTTTGGTTACATAGGCT
3' ss Score
7.64
Exon sequences
Seq C1 exon
CTTTTGGGGTGCTCTTATGGGAAATTGCTACATATGGAATGTCACCATATCCAGGTATTGACCTGTCTCAGGTCTATGATCTACTGGAAAAAGGATACCGAATGGAGCAGCCTGAAGGATGTCCCCCTAAGGTGTATGAACTTATGAGAGCAT
Seq A exon
GTGAGTATTCTTGCAGATTTTAATTTTGAAGTAGTTTAAATGAGCAATTCTGGATGATTAATAACAAAATTGAAAACATTTTTCCTATCAATGTTGTAAGATTGTATTCAACCTTGTGACATAGAGTTGGTCACTGATCAACCAATTGGGCTACTGTATGCTCTACTACTGAGTCACACTGGAATCCTAAGAATCATTGTCCATGGCCAAGTACTCACTCAGTTTCCCAAAAGATTTGCCTGTATAATAAGGTAATAAAAAATGGATTTGGAGATTAGGTTGGGGAGGGTTGCTCTCAGCTACGCAAAATGAGTGTTGAAGACTGGAGAATGCATGAAAGTGACTTCTGTGATGTGTAAACAAGAGCATCTGACTTCTTAAAGATGAAAAAGTAGGGAGGTGAGTGGTGAATTAAACCACCATGTATTTGAGTCTCATTATTTTCTCATTGAGCATTGACTGCCTACTGCTGTCATCAAATGTGAATTCCAAACTCCCCTTTTCTGATACACTGTTATGTTTTGGAATGTGTACAACTAATTGTGAGTGAGTGAGTGAGTTTGAAGAGAGGTTTTACTACTTTTCATTTTTCCAATGGAAGAAAACTTTTCTAAACCATCTCCCCACCCCCTCTGCATCCCTCTAGTGGAGGGAACAGGAGCTGAGACTGCATAGAAGGACTGGCCCTAGGAAGTGGGTTCATCGCACCTCAGGCTGGGACTAAGAAATAGCTGCCTCACTGTCACTGCAGACTTGCTGTAACTGTGCTTTAGCTAGCACATGTCCCAGAGCATGGAGCTCACCCTCAGGTGGGCCCTGAATATTTAGTTTCTGCCAAGAAGCTTTTACTACTCTTCTCTTTTGGTTACATAG
Seq C2 exon
GCTGGAAGTGGAGCCCTGCCGACAGGCCCTCTTTTGCAGAAACACATCAAGCTTTTGAAACCATGTTCCACGACTCTAGCATTTCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015026:ENSBTAT00000020006:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.065
Domain overlap (PFAM):
C1:
PF0771412=Pkinase_Tyr=FE(20.2=100)
A:
NA
C2:
PF0771412=Pkinase_Tyr=PD(7.1=58.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTTGGGGTGCTCTTATGGGA
R:
TCAGAAATGCTAGAGTCGTGGA
Band lengths:
241-1114
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development