RnoINT0011373 @ rn6
Intron Retention
Gene
ENSRNOG00000004305 | Abl2
Description
ABL proto-oncogene 2, non-receptor tyrosine kinase [Source:RGD Symbol;Acc:1590898]
Coordinates
chr13:74234061-74236081:+
Coord C1 exon
chr13:74234061-74234213
Coord A exon
chr13:74234214-74235991
Coord C2 exon
chr13:74235992-74236081
Length
1778 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGT
5' ss Score
8.31
3' ss Seq
TAAGTTCTCTTCCGCTGCAGGCT
3' ss Score
7.69
Exon sequences
Seq C1 exon
CTTTTGGAGTACTGTTGTGGGAAATTGCTACGTATGGAATGTCACCATATCCAGGTATTGACCTATCTCAAGTCTATGACCTACTGGAAAAAGGATATCGAATGGAGCAGCCTGAGGGATGCCCCCCTAAAGTGTATGAACTTATGAGAGCAT
Seq A exon
GTAAGTGTTTTGCATGATTGAGCTTTCAAAAAGAACCAGCAACAGGATGGTTAATGAGATGGGCACCATTTCTGCTCTCAGCCTTGTCAGACGGATCTAGTCTTGTTAACAGTTAAGGAGCTTGCCATGGGCAAGGCAGTTGGCATAGTGTGTGATACACCACTGAGTCTTACTGGAGTCCTAAGAATAGATGTCTGCGGCCAAATATAGTGCCAATTTCTCAAAAAACATTTGTATTGCATATTCAGTAAGACAATAAGAAGTTGTTTGTATATATGTTTGAAGGCTGGCTGCTTTCAGCTAGATAAGAATGGTTACTAAAGACTGATTGTTAAGTAACCTCTATTGGGCTGGAAGACGTGCCTGAGCCCAAATCCCTAGTAACTACATGAGATGCCTGTCTCAATGGCCTGTAGCCCCAGTACTGGGATCTCAAGAGATCCCAGGAACTCACCGGACAGCCAGCAGCACACTTAGCTGAAGTGGCCAGCTTCTGGTTCAGAAGAGACCCTAGGTCAGGGGACTAAAGTGTGGAACAGTAGAGAAAGATGTCCTCCTGTCCTCTGGCTTACACATGCCTTACACATGGGCATCATCCCTCTCTCTACTACACAAATAAAAACCAGCCGTTATCTCTTCTGACTGTGAGCAGCACCATGGCCAGGCTGCTTAGAGATACACTGTAGGAAGGAGAGTAGGAAGCAGAAGTATGCTCATGTTGACGCCAAGCTCGACCATTACTGTGTTCTACTGTACTCTTACTTCTCATGCTGCCCTTTATCAAGGGAACTCTGGAATCCCCTGATAGCTTGTTAAACTTCTCAATTCATAACTCAATTTTTAGGAACTTGGGCTTTGGGGGAGGGAGGTTCTCATCATGAAACTGCTTGGAACTCACTGTGTCCAGCAAACTTGCCTTGATGTCAGTGATCCATCTGCCTCTGCCTGCCCAGTGCTGGGTTTAGGGATGTGTGCAACCATGCCTAGACAGTTTGTTTTTAAAATTATATTGTTTATTTAGTTATGGGGAAGTGTGTGCGTGAGTGCGCGCTTGCAGCACACACAGCACACACCACACCACTTCACACACCACTCACACACACACACACACCAATTGCAGTATTAGTGTAAGAAATCAAGACAAAATTTTCCATTAAGTAATTTTATTTCCACCCTGTGAAACCCACTTGGGTTGTCAGGCCTTTGTGTGGTGAATGCTTCTGCCCACTGACCCCGCTTGCCTGCCCGTGGTTCATTTTTTATTCCCTCCCTCCCCTCTCCTTCTCCTCCTCTCCCTCTCCTCCCTCTCCTCCCCTCTTCCTTCCCTCCTTTCTTCCTTCTTTCTTTTTTTTTTTTTTTTTTTGAGACGGGTCTCTCTGTAGCCTTGTTGTCTGTTCCTGGAATTTACTCTGTAGACCAGGCTGGCCTCAAACTCAGAGAGCCACTGCCTCTGCCTCCTGAGTGCTGGAATTAAAACCATGCACCATTACTGCTCTGGTTAGCTCACTTTTCATAGAGTAAAACTTGCTATTTTCTAAATTTTTCTCTCCATCTTTTCCTCGTTTTTGTAGTAGTAGGAATGGGAACCAAGGGTAAACAGGACCAGCACTAACAGTGGGCCCTCATACCTCCCAAGGCTGGAGAGGTAGCTACTCATCCCACAGTTCATGTACATGCTATAATCCCGCTAGGCACACGCCACGGCATGTGTACCCATTGCTTGGTATGCCACTGGGGATGAATCCCTCAAGGAGGCTGTAAGTTCTCTTCCGCTGCAG
Seq C2 exon
GCTGGAAGTGGAGCCCTGCGGACAGGCCCTCTTTTGCTGAAACCCATCAAGCTTTTGAAACCATGTTCCATGACTCCAGCATCTCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004305:ENSRNOT00000059524:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0771412=Pkinase_Tyr=FE(20.2=100)
A:
NA
C2:
PF0771412=Pkinase_Tyr=PD(7.1=58.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTTGGAGTACTGTTGTGGGA
R:
TCAGAGATGCTGGAGTCATGGA
Band lengths:
241-2019
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]