HsaINT0001803 @ hg38
Intron Retention
Gene
ENSG00000143322 | ABL2
Description
ABL proto-oncogene 2, non-receptor tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:77]
Coordinates
chr1:179112309-179115030:-
Coord C1 exon
chr1:179114878-179115030
Coord A exon
chr1:179112399-179114877
Coord C2 exon
chr1:179112309-179112398
Length
2479 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
TTTTTTCTTCTGTTACATAGGCT
3' ss Score
8.36
Exon sequences
Seq C1 exon
CTTTTGGGGTATTGTTGTGGGAAATTGCTACCTATGGAATGTCACCATATCCAGGTATTGACCTGTCTCAGGTCTATGACCTACTAGAAAAAGGATATCGAATGGAACAGCCTGAGGGATGCCCCCCTAAGGTTTATGAACTTATGAGAGCAT
Seq A exon
GTGAGTATTTTTGCATGTTTTAATTTTGAAGGCATAAGCTAGCAGTTCAGAATAGTTAACAAAATTAGAAACATTTCTCCTCTCAGTGTTGTTAGATTGAATCCAGCCTCATGACATTTAAAGAGTTTATCATTGATCAGCCAGTTGTCATATCATATACCATTGAATCTTATTGGAATCCTAAGCATAGTTGTTATGGCCCAAATATTGACCCAGTTTCTCAGAGACATTTGCATATTTAATAAGATAAGAAATTGAGTTTAGAGATTAAGGTGGGGAGGGCCGTTTTCAACTAGATAAAAATGATTGCTAAAGACTATGAAGAATGCATAAAAATAACCTCTGTGTAGATAAACAGAAGCATCCGATTGCTTGCAGATGAAAAAGTAGGAAAGTGAATAGTGGATTAAATTGCAGGGTTTTGTTTGTTTGTTTATTTGTGTTGTTGTTTTTCAAACACTCTTGCTTTGTTGCCCAGGCTGGAGTGCAGTGACGTGATTTCGGCTCAGTGACGTGATTTCGGCTCACTGAAACCTCTACCTCATGGGTTCAAGTGATTCTCATGCCTCAGCCCCTCAGTAGCTGGAACCACAGGCACGCACACCATGCCCAGCTAATTTTTTTTTTTTTGAGACGGACTCTCACTATGTTGCCCATGCTGGAGTGCAGTGGCACAATCTTTGCAACCTCCGTCCCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTTGCTGGGATTACAGGCACCTGCCACCACGCCTGGCTAATTTTTGTATTTTTGGTAGAGATGGGGTTTTGGCATGTTGGCCAGGCTGGTCTTGAACTCCTAACCTCAAGTGATGCGCCCGCCTTAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCACGCCCGGCCTAATTTTTGTATTTTTATTTATTTATTTATTTATTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAAGCTCCACCTCTCGGGTTGATGCCATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTATAGGCGCCGGCCGCCACCACGCCCGGCTAATTTTTTTTGCATTTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCCATCTCCTGACCTCGTGATCCGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCTTGAGCCACAGCACCCGGCCTGTACTTTTAGTAGAGACAAGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGGTCTCAAGTGATCTGCCCGACTCAGTCTCCCAAAATGCTGGGATTACAGATGTGGGCCACCAGGCCTGGTCCTAATTGCAGTTGTGTTTGAACATAAGTCTGTGTTGTTTCCTCATTGAACATTGACGTTCTCTGTTGCACTTTGTCAAAAATGAACTCTGAGATCCTCCTTTTTGATATCCTTTTATATTTCTGAATGTATACAGTTGATTATATGGTTAGGCTGAGTTTGAAGACAGGTTTTACTTCTTTTATTTTCAAGTGGAAGAAAACTTGCCATTTTCTAAAACATCTCCTTGTTTCTCCTCATCCTTTTATTAGAGGGAATAGGAGCTGAGGCTAAATCGAAGCACCAGCCTTAGAAAGTGGGTTAATGGCCAGGTGCAGTGGCTCACACCTGTAATTCTAGCAGTTTGGGAGGCCGAAGTGAGCAGATTGCTTGAGCTCAGGAGTTCAAAAGCAACCTGAGCAATGTGGCAAAATCCCATCTACATAAAAAATACAGTAGCTTGAGATCGCTGTGTGTGCTCACTTTGGCTGGGTGCAGTGGCTCAAGCCTGTAATCCCAGCGCTTTGGGAGGCTGAGGCGGGTGGATCACCTGAGGTCAGGGGTTCGAGACCAGCATGGCCAACATGGCGAAACCCCTGTCTACTAAAAATACAAAAATTAGCCGGACGTGGTGGCGTGCGCCTGTAGCCCCAGCAAATCGTGAGGCTGAGGCTGGAGAATCACTTGAACCCAGGAGGCAGAGGTTGCAGTGAACCGAGATCGCGCCACTGCACTCCAGCCTGGGTGACAGAGTTAGATTCCGTCTCAAAAAAAAAAAAAAAATTAGCTGGGCGTGGTGTTGCACACCCATAGTCCCAGCTACTTGGGGAGCTGAGGCAGGAGGATTGTTTGAACCCAGGAGGTCAAGGCTGCAGTGAGTTGAGATCATGCCAGCTGCACTCCAGCCTGGGTGACAAAGCAAGACCCTGTCTCAAAGAAAAAGAAAAAAGGAATTTAGAAAGTGGGTTCATTATACCTCTGAGTCTAGAGCTGAGAAGTGGCTATGTTGCTATCATTGTGAACATGCTGTAACTGTACTTTAATAAGTGTGCATCATGATGCATAGAACTCATTATTAGATACACCACTGGATATTGAATTTCTGCAAGGAGTTTTTAATATTTTTTCTTCTGTTACATAG
Seq C2 exon
GCTGGAAGTGGAGCCCTGCCGATAGGCCCTCTTTTGCTGAAACACACCAAGCTTTTGAAACCATGTTCCATGACTCCAGCATTTCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143322:ENST00000502732:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0771412=Pkinase_Tyr=FE(20.2=100)
A:
NA
C2:
PF0771412=Pkinase_Tyr=PD(7.1=58.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development