GgaINT0038970 @ galGal4
Intron Retention
Gene
ENSGALG00000004213 | ABL2
Description
ABL proto-oncogene 2, non-receptor tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:77]
Coordinates
chr8:6213700-6214432:+
Coord C1 exon
chr8:6213700-6213852
Coord A exon
chr8:6213853-6214342
Coord C2 exon
chr8:6214343-6214432
Length
490 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
3' ss Seq
CCTGCTTTCTCACACTGCAGGTT
3' ss Score
10.04
Exon sequences
Seq C1 exon
CCTTTGGGGTGCTCTTATGGGAAATTGCGACCTACGGGATGTCACCATACCCAGGCATTGACCTCTCTCAGGTGTATGATCTGCTGGAAAAGGGCTATCGGATGGAACAACCGGAGGGATGCCCTCCAAAGGTTTATGAACTGATGAGGGCCT
Seq A exon
GTGAGTATCTTCTTCCAGTCTGGGGAACAAAGCCTGGCAGGGGTGGGAGAAATCTGTAGTCAGCTCCCAAGTCCTTACTTCTTAGATGCCATTTTGTTAACTGATGTGGAAAAGTCCCTGTCACCTGAGACGTACCTCGTCACTGATGCAAAGTGAGTGTGGTCTCTAGGGAACAAGAACTCTCAGAAACTGTCATCTCTGATTACAGCTGGCGAGCTTTTGTGGTAAACTGTACTGTGACTTGTGAGCAGGACTCTTAATATGGAATCACCAAAAAAGAAAGAAATTTAGTTCTTAGCAGACACAGCACCTCTGCAGGAGACAAGCAGCTGACAGGGCTGCACAAACTCATCCTCCAAGTGTGCTGCTTAGCATTTGCCATGAAAAGCTCTCTAACACTGTGTAACAAATTTTTAATCTACTAATGAAAGACAGAATAACAAATTATCTCCTGCCTGTTACAGACTTACCCTGCTTTCTCACACTGCAG
Seq C2 exon
GTTGGAAGTGGAACCCACCAGACCGACCTTCCTTTGCTGAGACTCACCAGGCTTTTGAAACCATGTTCCATGACTCGAGCATCTCAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004213:ENSGALT00000006699:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.145
Domain overlap (PFAM):
C1:
PF0771412=Pkinase_Tyr=FE(20.2=100)
A:
NA
C2:
PF0771412=Pkinase_Tyr=PD(7.1=58.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTTGGGGTGCTCTTATGGG
R:
TCTGAGATGCTCGAGTCATGGA
Band lengths:
241-731
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]