DreINT0024630 @ danRer10
Intron Retention
Gene
ENSDARG00000013841 | abl2
Description
c-abl oncogene 2, non-receptor tyrosine kinase [Source:ZFIN;Acc:ZDB-GENE-020809-2]
Coordinates
chr8:14935844-14936192:+
Coord C1 exon
chr8:14935844-14935996
Coord A exon
chr8:14935997-14936102
Coord C2 exon
chr8:14936103-14936192
Length
106 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
3' ss Seq
TTTGGTTTGTGTATTGGCAGGCT
3' ss Score
5.37
Exon sequences
Seq C1 exon
CATTTGGAGTTTTGCTTTGGGAGATTGCGACGTACGGCATGTCTCCATATCCAGGAATTGACCTGTCTCAGGTATATGATCTGCTGGAGAAGGGCTACCGCATGGAGCAGCCCGAAGGCTGTCCTCCTAAAGTCTACGAGCTCATGAGAGCCT
Seq A exon
GTGAGTATCACGAAAACCTTCAAATAGATTGTTCCTCAGTTATGTTCATGCATACTACTCTAGTTTTGAGGTATTAGGTAAGCATGTTTGGTTTGTGTATTGGCAG
Seq C2 exon
GCTGGCAGTGGAGTCCACTGGATAGACCCTCATTTGCTGAGATTCATCAGGCCTTTGAAACCATGTTTCATGACTCAAGCATTTCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013841:ENSDART00000041697:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0771412=Pkinase_Tyr=FE(20.2=100)
A:
NA
C2:
PF0771412=Pkinase_Tyr=PD(7.1=58.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTTGGAGTTTTGCTTTGGGAGA
R:
CTTCTGAAATGCTTGAGTCATGA
Band lengths:
243-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]