HsaINT0001803 @ hg19
Intron Retention
Gene
ENSG00000143322 | ABL2
Description
v-abl Abelson murine leukemia viral oncogene homolog 2 [Source:HGNC Symbol;Acc:77]
Coordinates
chr1:179081444-179084165:-
Coord C1 exon
chr1:179084013-179084165
Coord A exon
chr1:179081534-179084012
Coord C2 exon
chr1:179081444-179081533
Length
2479 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
TTTTTTCTTCTGTTACATAGGCT
3' ss Score
8.36
Exon sequences
Seq C1 exon
CTTTTGGGGTATTGTTGTGGGAAATTGCTACCTATGGAATGTCACCATATCCAGGTATTGACCTGTCTCAGGTCTATGACCTACTAGAAAAAGGATATCGAATGGAACAGCCTGAGGGATGCCCCCCTAAGGTTTATGAACTTATGAGAGCAT
Seq A exon
GTGAGTATTTTTGCATGTTTTAATTTTGAAGGCATAAGCTAGCAGTTCAGAATAGTTAACAAAATTAGAAACATTTCTCCTCTCAGTGTTGTTAGATTGAATCCAGCCTCATGACATTTAAAGAGTTTATCATTGATCAGCCAGTTGTCATATCATATACCATTGAATCTTATTGGAATCCTAAGCATAGTTGTTATGGCCCAAATATTGACCCAGTTTCTCAGAGACATTTGCATATTTAATAAGATAAGAAATTGAGTTTAGAGATTAAGGTGGGGAGGGCCGTTTTCAACTAGATAAAAATGATTGCTAAAGACTATGAAGAATGCATAAAAATAACCTCTGTGTAGATAAACAGAAGCATCCGATTGCTTGCAGATGAAAAAGTAGGAAAGTGAATAGTGGATTAAATTGCAGGGTTTTGTTTGTTTGTTTATTTGTGTTGTTGTTTTTCAAACACTCTTGCTTTGTTGCCCAGGCTGGAGTGCAGTGACGTGATTTCGGCTCAGTGACGTGATTTCGGCTCACTGAAACCTCTACCTCATGGGTTCAAGTGATTCTCATGCCTCAGCCCCTCAGTAGCTGGAACCACAGGCACGCACACCATGCCCAGCTAATTTTTTTTTTTTTGAGACGGACTCTCACTATGTTGCCCATGCTGGAGTGCAGTGGCACAATCTTTGCAACCTCCGTCCCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTTGCTGGGATTACAGGCACCTGCCACCACGCCTGGCTAATTTTTGTATTTTTGGTAGAGATGGGGTTTTGGCATGTTGGCCAGGCTGGTCTTGAACTCCTAACCTCAAGTGATGCGCCCGCCTTAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCACGCCCGGCCTAATTTTTGTATTTTTATTTATTTATTTATTTATTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAAGCTCCACCTCTCGGGTTGATGCCATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTATAGGCGCCGGCCGCCACCACGCCCGGCTAATTTTTTTTGCATTTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCCATCTCCTGACCTCGTGATCCGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCTTGAGCCACAGCACCCGGCCTGTACTTTTAGTAGAGACAAGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGGTCTCAAGTGATCTGCCCGACTCAGTCTCCCAAAATGCTGGGATTACAGATGTGGGCCACCAGGCCTGGTCCTAATTGCAGTTGTGTTTGAACATAAGTCTGTGTTGTTTCCTCATTGAACATTGACGTTCTCTGTTGCACTTTGTCAAAAATGAACTCTGAGATCCTCCTTTTTGATATCCTTTTATATTTCTGAATGTATACAGTTGATTATATGGTTAGGCTGAGTTTGAAGACAGGTTTTACTTCTTTTATTTTCAAGTGGAAGAAAACTTGCCATTTTCTAAAACATCTCCTTGTTTCTCCTCATCCTTTTATTAGAGGGAATAGGAGCTGAGGCTAAATCGAAGCACCAGCCTTAGAAAGTGGGTTAATGGCCAGGTGCAGTGGCTCACACCTGTAATTCTAGCAGTTTGGGAGGCCGAAGTGAGCAGATTGCTTGAGCTCAGGAGTTCAAAAGCAACCTGAGCAATGTGGCAAAATCCCATCTACATAAAAAATACAGTAGCTTGAGATCGCTGTGTGTGCTCACTTTGGCTGGGTGCAGTGGCTCAAGCCTGTAATCCCAGCGCTTTGGGAGGCTGAGGCGGGTGGATCACCTGAGGTCAGGGGTTCGAGACCAGCATGGCCAACATGGCGAAACCCCTGTCTACTAAAAATACAAAAATTAGCCGGACGTGGTGGCGTGCGCCTGTAGCCCCAGCAAATCGTGAGGCTGAGGCTGGAGAATCACTTGAACCCAGGAGGCAGAGGTTGCAGTGAACCGAGATCGCGCCACTGCACTCCAGCCTGGGTGACAGAGTTAGATTCCGTCTCAAAAAAAAAAAAAAAATTAGCTGGGCGTGGTGTTGCACACCCATAGTCCCAGCTACTTGGGGAGCTGAGGCAGGAGGATTGTTTGAACCCAGGAGGTCAAGGCTGCAGTGAGTTGAGATCATGCCAGCTGCACTCCAGCCTGGGTGACAAAGCAAGACCCTGTCTCAAAGAAAAAGAAAAAAGGAATTTAGAAAGTGGGTTCATTATACCTCTGAGTCTAGAGCTGAGAAGTGGCTATGTTGCTATCATTGTGAACATGCTGTAACTGTACTTTAATAAGTGTGCATCATGATGCATAGAACTCATTATTAGATACACCACTGGATATTGAATTTCTGCAAGGAGTTTTTAATATTTTTTCTTCTGTTACATAG
Seq C2 exon
GCTGGAAGTGGAGCCCTGCCGATAGGCCCTCTTTTGCTGAAACACACCAAGCTTTTGAAACCATGTTCCATGACTCCAGCATTTCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143322-ABL2:NM_001168236:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0771412=Pkinase_Tyr=FE(20.2=100)
A:
NA
C2:
PF0771412=Pkinase_Tyr=PD(7.1=58.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)