BtaINT0012224 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008424 | ABR
Description
Bos taurus active BCR-related gene (ABR), mRNA. [Source:RefSeq mRNA;Acc:NM_001046204]
Coordinates
chr19:22373593-22379126:+
Coord C1 exon
chr19:22373593-22373653
Coord A exon
chr19:22373654-22379073
Coord C2 exon
chr19:22379074-22379126
Length
5420 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTA
5' ss Score
7.52
3' ss Seq
TGTTCCTGCTTCCCCAACAGCTC
3' ss Score
10.06
Exon sequences
Seq C1 exon
GAACTCAAGGTGAAAGGTCCCAAGGACTCCAGGGACAGCCACACGTCAGTCACTATGGAAG
Seq A exon
GTACTATGGGGAAAGGGTTGGATTAACAGTCACCTTCCTTTGTCTGGCTTTGTGCCTTGCTTGTAGGTGTGTGCACACGTACTCACACGCGCGCGTGTGTGTGTGTGTGAGCGCGTGCACGCGAGGAGGAATCCAGCCTCTGTCCCCAGGCAGCTGGCCAGCTACAAACGTGCTCCTCCTTAGGATGCCAGCAGGCGCCTCGCTCCCCTCCTCCTCCCCGCTCCACGCGCACCGCCCTCCCTCCCCTCCCCCTGGCTAGAGGCGCACTCAGAAGCGGCTGCTTGGTTCTGGAGGCTGTGCAGCCGCAGCCGCGAAGGTGGCTGAGTGGCCGGGCCGCTGAGGGGAGCCGGGGAGCCCGGAGCGATGGCCGCACGCTCCCGCCACGGGGACGCAGGCTGCCATGGAAATACTTCTCATCATTCGCTTCTGCTGTAACTGCACCTATGGTAACCCAGGCCTCCTCTCGCGGGAGGTGGGGGTGTCCTCCCACCTCTGGGAGCCGGATGGAGTGGGTGGATGGAAGGGGTGGAAATGTGGCCGGCAAGGGGGGGTGGGGGGCAGCAGGGTAGGGAGGGGGAACAAGTGGCTGGACTTGTGTTAAGCCGCGGGCGGCCAGCTTCCAACCTGGAGTTGAAGTCTGGGGGCCCCTCCAGGCAGAGGGGGCTTGGAAATGGGAGGACCGGGCTGAAGGGGCCAGGCTCCTCCGAGGATCTGTGGGGGGAATTCGCGGCTCAGCTCCAGAAGCTGGGAGCAACTTCCTGGAGAGGCTGTCAAGGAGAGAAAGTGACAAGGCTGCACCTGCAGGGGTGGCCACCCCGGGGCTGGAGAGGGGTCAGCAGGGGCCGGTCGGAGAGGGCCAGGTGGTCCAGATGGCAGTGCCCTGGGCTCGGAGGGTGCCAGCTCCTGCTGGAGGGAGAAGTTGGGAGTCTCTTTGTTTAGGGCGAGAGGAGAGGATGGTGAGCGACCAGGGTATTGTGTGCTTGGAGCGCACACGCTGCCTTGGCTCTCTGCTCTGTGCACAGGCGACTGGAGAACGTGAATGTGGTTGGGAGCAGGAAGGAATTGGGTAGCCCCCAGGGGGTTCGTTCTAACCACTGGAGACCCTTGAGCTGAGGTCTTGTCGCTTAGTGCAGAAGGTCCGCGGTGAGTGCTGGTGGGAGAGGGGGGCGTGGCAGGTTCTGCTTTGTGAAGGTCACACCCCCACTGTATGATGGGTGGGGGGCCAGGGGGCAGACGGAGCATCCTCTGCAGCTCCCTCAGGGACAGGGGTCCCAAGACAGGTGTGTGCTGCCACCCAGGTTCTCGGCTCAGAGGAGACTGGCACCAGCCTAGGCAAAGAGGTAGGTGTCCGGAAGCCGGCAGGCCCCACCTTCCAAGGCAAGAGGTACCTTCGGGATGACCCAGGCTGCCTTTGGCAGGGGCATAAGGGTCAAGTGATGCCCCCGGCCTGCTGCTCTGGGCCCCTAGGGCAGGCGGCTGGTTTCAGGACCGTCTTCCCTCCCACCAGGCAGGCGTTTTGTCTCAGCTTCTCTCAGTCACTTTGCTTTCATGTCTCCGTGGTAACCTGGAGCTCCTTGTTGAAGGCTGAACAGAGGCGGGCGGCAGCTTGCTGGAGGAGCGATGCTGAGGTTTTCCGGGCTCTTCCCTGCGACCTCTGTGCACAATCAGCTGTCCCCTCCCCTTCTTAGATGTCCTGTATAGAAGACTGCTCATGATGGAGAGAGACCCTGAAGTCGTCCCTCTCTGGCTGTCCCAGCTGGACAGCACGGGGAGCACTAGTTAGCAGGCAGAGGCTGCCCTGGGCCCCACCCCTCGGCTCAGATCCTGACAGTCTGGACTTGAAGCTGGCCTGGTTGAAGATCGGAGGGGAAATGCCCTTCTCGATCTGGCCAGGGAGTTGGTCAAGTCTCCACTCTGCTTCTCTAAAGAGGAAACAGTCGGCCCTTTGCTTCCTCTTTCTTCCCCAAAAAGGAAGCTTAGTTTTAGTGAAACAGGCTCAGGACCTGAAGTTCAGGGTTTCTTCCACCCCTGAGATGAAGTTGGCTTCAAAGTGTGAGGGGTTAGGTGCGAAGGGGCCCTTACTGACCACACTGTTTGAACCTTCTCAGCCCCTCCAAAGGGTGCTGGTCTGACGTCTGAGAGAGGCTGAGTGACTTAGGGCTCACTCTGGGCTTGCCTCATAGCTCAATCAGTAAAGAATCTGCCTGCAATGCAGGAGACCTGGGTTTGATTCCTGGGTCAGGAAGATCCCCTGGAGGAGGAAATGGCAACCCACTCTCCGGTATTCATGCCTGAGAAATCCCATGGACAGAGGAGCCTGGTGGACTACAATCCATGGGGTCATAAGAGTCGGACAGGACCTAGCAACTAAACCACCACCACTGTGGTTGTCTGCCTTAGTGGTTAGGTACCGAATGTCCACTCTCCAGGGCTCCATGCCAAACATGGTTGGGGGGGTGGGAGGCAAAGGGAGTCTGACTCAGGCCCCTAAGGAGGGGGCTCACCTTGGCAACAAGAGAGGCCAGCTTATCCACTCCTTGATGAATCTTTCCCAGAACCCTCTCAAGGACCACTGGGCTTCTGCTGGTGCTGCCCTCCCCCATGGAGGGGGACGGCTCAAAATTAGGGAGCAGTGGTAGACCTACATTCAAAACCCAGCTGCCTCTTACAGCTTTGTGATTGTGAGCAAGTTACATAAAACTTCTTTGTACTTTGGAGAATTTTCTGCATATGTAAAATAGGACTAGTGATCATTGCTTTCCTTTTTTTTAAAAAAAAAGTGTATTTATTCCTTTATTTGTTTATTTGGCTGTGCCTGGTCTTAATTGTGGCACATAGGATCTTTCGTTGCGGTATGTGGGGTCTAGTTCCCTGACCAGGGGTTGAACCCGGGGCCCCATGTATTGGGAGCGTGGAGTCTTAGCCACTGGACCACCAGGACAGTCCCTTCCTTTTTTAATTAAAAGGAAATAGCACATGTAAAACAGTGCCATTGGACACGGAGTAAAGTACTCAGCAAGCTAGAGAGAGGCCCACCTTGCACAGGTCATGGTTTGTCTTTTAGGCTGTGTGAATGTTGGTTGTGAAAGTCCTGATTGGGGAAGGCTTTTAGGAGGAGGGGGAGAGACGGGCATTGCAACTTGGTCAACGGTGTGTGCCCCAGAAATGGGAACCACATGTTGAGGAGCAGGGAGAGGGGGAGGAGCAGAGGCAGGGAGCAGGTGTGTATGGGGCGGGGGGTGAGCTGTGCACTCTGCATTCTCAGGGGAAGCAGGTGTGGGGCACGCCCATCACGGCCGCCCTGGTTCCCTCCATATCTGACCGCGGCCCCGGGGCCTTGTCCTTGCTCTTGGCCTCTCCCCACCTTCCTCCCAGCTGCCCCTCCCCAATCTGGGGCTGATACATTAGGACTCATTCCATGGCCACAATCAAGTGGACTCTTGAGGTGACTCGAGGCATATTAATAACCCCTCTGAAACCCAACCTGCCATTTGTGCAGACCTCTGAGCTTAGTCAGAAACCTCTTCCTCCTGGGACCCAGCAGAGGGATGGAGGGGGCTGACACTGCAGTATCAACTTTCTCTGGGCAGGAACTCGAGGCCCACCCTGGCTGGTGTCTGCTGAACTTGGATTTTCTCTGGGTCTCGGGTTCTCAGAGAGTGATTTCCCCCTGCCCTGCAGATGGGCTGAGCCACAGGTGGGTACCCTAGACCAGGGGTCCCCGACCTCCAGGATCTCATGCCTGATGATCTGAGGTGGAGCTGATGTAATAATAATAATAAATCAGAGTACATAATAAATGCAATTCACTTGAATCACCTTGAAACCATGCCCTTCTTCCCGTCTTCCAGCAAACCAGTCCCTGGCGCCAAAAAGGTTGGGGACCGCTGCCCTAGACAGCCTCAGAACTTGCCCCTCCTGGGCTGGTGACCGATCTGTATCCTCATTGGCCCAGGATAGGCCAACCTGATCTTGTCCATTCTAGCACCCATTGCCCTTGGACAGGGAGGGGTTCTAGAAGTTGCTAGATTAAGAAAGGGCTGCAAATAAATCATGGGAGGTGTGTTTGCCTGAAGCAGTGGTTTTCAACCCTTATGACATCTCAGAATCCACAAAGGAGCTTTGTAAAAATGCTGATGCCTGGGTTCTGCCCAGCAGAGCCTGCTGTTTAGCTGATGGGAGAGGGAAAAAGAGGCATCTGAATCTTTTGAGAGTTCCCCACTGATTCTAACGGGCAGCCAAGCAAAGCCAGCAGATGAGGCTCAGGGCACACCGCTGAGACTGCATCTTCTCCGTAGCCAGCAGTTGTTTCCAAGTGACCATTTAGCAATGCGCAGGGTATTAATATCCAGGGCCTTGGGGAACTCTTTGGTTTGGGGGCTGGCTGGAACATGAGTGTCAGCCCTGGTACCTGTCACAGCCTGATCCCATGGGATACCCACTCTGGACCTCCTCCCCAGACCAGCATCCTGCCTCTTACTGCTCCTTCAGCAGGGGGGCAGAGGTCATGACCCCGTGGGCAAAGGTGCAGGCCCGGAGCTGAACCACCCAGGCTGGGAGGGGCAGGGCGCAGCTGCCGCAGGAGCTTTGTTCGGAAGTGTTGGTCGGCCAGCTGCCGCCTTCACCTGTTCCCTTGAATCCTGGACATCCTCATTTGGTATCCTGGTCGCCGAAGGGTGTGGCCTGTGGTGTTGTGGGGAGGGGAGGTCCTGCTGAGCTTGCATTTTCCAAGCCTCTTCAGGGGCTCTCTGACTCAAAGCCCCACCTGAATTCCTTTCGGAAATCTTTACCCCATCAGCTGCTACTTGAGAACAGAGCCTCTCCGTGGCCATCAGGCGTGCCTCCCTGGTCCTCAGCCAGGAGGGCATTGAGGGCACAGATAAGGGTCTTCCTCGTGGAGATGAGGTCAACAACATGGGTCAGAACGAAGCATGACGTTCCCAGCTGGTGGGGCCAGGCCTTGGACCAGAGGGATATGAGAATGATGGGGTTTGGGGATACCTCCCTCCCTGGGAAAACAGTGTCTCCTTCTTGCAGTCTGGGGTCCTGGGTGTGACCCCCACTGTCCTGGAGCTGTTAGGGGTAAGGCTGTGTGATTTCAGCAGAGTCCAGAGGAGCATCTGTGTCTGCTATGAGCCTGGTCAGGCTGGGACAGGCCTGGGGGACAAATAGCCCTTCAAGAAATCATGTCTAGTGGGAGTCAAGATGAGGTGGGTGGAAGGGGCCGAGGTCACCAGAGCTGTGTGTCCGTCTTTTGGGGTGAGAATGGAGGCGTGGTTGCTGTGGAATCCACTCTGGCCTCCTGTGAGTGGACGTCCATGCAGGGGAGGGAGGCGGCTCGGGGCACAGGCTGGCCCTTCAGGTCTCAAACTCCTCCCTGTCTTTCATCTGACCTGTCCCTGTTCCTGCTTCCCCAACAG
Seq C2 exon
CTCTGCTCTACAAGCCCATTGACCGAGTCACCAGGAGCACCCTGGTCCTACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008424:ENSBTAT00000011083:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.524 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(10.6=100)
A:
NA
C2:
PF0062115=RhoGEF=FE(31.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development