MmuINT0009181 @ mm9
Intron Retention
Gene
ENSMUSG00000017631 | Abr
Description
active BCR-related gene [Source:MGI Symbol;Acc:MGI:107771]
Coordinates
chr11:76277740-76282278:-
Coord C1 exon
chr11:76282218-76282278
Coord A exon
chr11:76277793-76282217
Coord C2 exon
chr11:76277740-76277792
Length
4425 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTT
5' ss Score
8.4
3' ss Seq
TTTCTCGGACTTCCCTACAGCTC
3' ss Score
9.26
Exon sequences
Seq C1 exon
GAACTCAAAGTGAAAGGGCCCAAGGACTCTAAGGACAGCCATACATCAGTCACCATGGAAG
Seq A exon
GTACTTTGTTTGGGGAGTGGTATGGACTACAGTTCTCTTCCTTTGTTTCAGTGAACTGTGAGCTATGTGAATGTGGTAGCCTCCCTGCCTCACTCTGTGTGTGTGTGTGTGTGTGTGTGTGCTGCCTCTCCTCCCTAGGCATCAGGCCAGCTACAAACGTGCTCCTCCTTAGGATGCCAGCAAGCTTTTGGTCCCTCCTCCCTCCTCCCCTCCCTCCCTCCTCCTGCCTCTCCACACTCCCGCCCTCCCCCTGTTGGATGAGCACTCGGGAAGGAAGGAAGCGGCTGCTTGATTCTGGAGGTTGTGCAGCAGCAGCAGCAGCAGCCAGCAAGGTGGCCGAGTGGCCGGCCTGCTGAGGAGAGCCAGGAGCCTGGAGCAATGGCTGCAGGTCCCTGCTGCAAGGATAGAGGCTGCCATGGAAATCCTGCTCATCATTCGCTTCTGCTGTAACTGCACCTATGGTAACCCAGGCGCCCCTCCGTGGGAAGTGGCATGCCTTAAGCCATCTGGGGGCTGACCAGAAAGGACTTTAATATGGTCAGCGGGATTTAGGGGCTGCAGGGAAGGGAGGACGGTCGTGCTGTTGAACTCACTTACATTTGCTTTGTGGTCAGCCTGGAGTTGAAATCCAGGGGCTGTACTGAGTATCTCTGAAATGGAAGGACCAGGCTAGAAAGGTCCAGGTCCTCCTGAGGCAGTGTGTAGAACTGGTGGCTTAGCATGTATATGCATGAGAGGCATTGAGCAACTTCCTGAAGAGGCTAAGGAAAGTGACAGGCTATCCCCTCAGGCCTGAGGTGGGGGCAAGGAGCAGCTGGGGCAGAGAGGGACAGAGTCTGGAGAGCTGCACCTCAAGGCAAGAGAGTGCCAGCCGGGGCAAGAGGGAGTTTCTTTGTTTCGTGAGCACGGAGGATGCTGAGCATCAAGGGTATTGTGTGCTCTGTGCACATGCTGCCTCCTCTCTGGTGGCTCTGGGAGAGCAGGGAGGAGCTGGTTGGTTTCGGGAGCAGCATTTCCAGCCCCTAAAGACCCGAGCCCAGGTCCCAGCACTCAGTGCAAAAGGTCCACGTGAGAAGGGGGTGTGGCCGGCTGCTGCTTTGTGAAGGTCACACACCCACTTCAGAGGAAGGAATCTGGAGCATCCTCTGTGCCACTCCTTCAGCTGGGGAGAGGAGGTGTCCTGGGACAGGCGCATGCTGTCAGCCAGGCTCCTCCTCATAGGATACAGAGGAGGTGCATGCAGGGAGTTATCCAGACCTGGTGGCCCTACTCTCTAAGGCAAGAAGTGCCTTAGGGGTGACCTAAGCCACCTCTGTCGGGGAATGAGGGGCTCGTGTAAGCCCATGTGTGTCAAAGAGACTGGTTACGGACCTCTCCTCTTCCCTCCTACCAGGCGCTTTGTCTTTACCCTTCTCAGTCACTTTGCTTGCCTATCTCCGTGGTAACCTGGGGCTCCTCTTACAGGAACCGAGTGGGGGGCGGCAGTTTGCTGGAGGAAAGATGATAGATGAGCTTTCCAGTTCTTTCCCAGAGGCCTGTATGTTAGGGAGCTGTTCAGGACCACGGTCCCTTCATCTTCCCTGGCTTGTTCTGTGTCTGGTGCTCATGGTGGAGACGGCCTTTGTGCTGCCGGTTAGCTGACTCTGACAGGCTGGGGGAACCCAGGGAACAGTGGGACTTGATGGCCTGTCAGAGGTCAGGGAAGAAATGCAGGGCCTGGTTGAGGGGCCAGTTACATGTCTGTGCTGATTTTCTAACAAGGAGAAAGGATCGGCTCTCTGATCCCCATTCCCTCCCTAGAAGGAATAGTCCTGATGAAGCAGACCCGAGACCTGGAGCCCAGGGGCTCTTTGGTCCACATGATTCCATAATCTTTGAAGTCTGCTTCAAAGTGGGGAGTAGGTTGAGGAACTAGCTCTGCAGCAAGCACTCACCTGGTTAGATGGAGTCTTTTCCAGAACTCTTATATGTGGAGTTCCATTGGCCACTCTCTTCTGAGGAAGGCAGTCCAATTGTAAGTGCATGGGTGAACCAAAATTTAAATCCCATATATCTTTCACAGCTTTGTGATTTCAGGCAAGTAATTTGTGCCTGAGTTTCTGCACCATAAAATTGAGCTAGTGAAAATTGCGCTCACTTTTAGTGACAGGAAACAGTGTACGTAAGGCAGTTCCGTGACACATGATAGGAGACCAGCTTGTTCATAATGGTGTTCTGACTTTTGGTGTTTATAAAGGTATAGTCAGGGAAGGCTTCCTGGAGGAGGGAGAAAGATGAGCAAGACACTGTGTTTGGTGGCACCTATCCCAGGAAGAGAGGGGAAAGCATGATACAAGAGTAGAAAATGGGCAGAGCCTAGGAACAGAAAATAGGTGGGGGCTTGTGAAGCACAGAGGACCACTCAGAAGCCAGGGGTGTGGAGGAGGGTGGGGGAGGGCCACAAAAGCACCAGGGAGGGGGGGTTACCTCTCCTGGCCTGATTTCCTCCCACACACCTGATCCCCCCTTGACCAAAACTGCAGGATTCATTCCACGGCCCTGTCAGATGGACTCTTGAGGTGACTTCAGGTATATTAATACCTCCCTGAAACCTGATCCACCATTTCTGCAGACTTCTGAGCTTAGTCAGAAACCTTTTCCTCCTGGGACCCAGAGAGGGCTGCAGAAGCTGATGTTTCAGTGTCAGCTTTCCTGGGGGAGGGGACTCGGGGCCCACCCCAGCCTGTGTCTGTTGACCTTGTGCCCGCCCCAAGGTCTCAGTGTTTCTAGTGTGAGTTCTCGCACTGCAGTGTAGATGCCTGAGCTACAGGTGGGTGGGGCCTCAGACATCTTCAGAGATGAGACCCAACGTGCACGGCCAAGCCTGGCTCTCACTGTCCCGGTACACCCTAAACCCATGGATCGGCCCATTTCATCCCCTGTGGGTTATCGGGGGCCTGCTAGAAATGGCTGGTTAAGAAAGGACTGCAGCGGGGCAGTGGTGGCGCACACCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGAATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAAACAAAAAAAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAGAGAAAGAGAGAGAGAGAGAAAGAGAAAGAGAGAAAGAAAACTGCAAAAGAGTAACGGGAATAAAACAGCAGTTGTCAGCTGCTGATATATATCCATCTCAGCAAAATAGCCTTTTTTTAATCCTTTGGAGATCTTGGTTTAGTCGATAAAGTGTAGAGGGGGACATCTGTTTCTTTTAAGAGCTTGCCTGTGATCCTAATGGGCAGCCAAGCAAACAAGGGCTACAGATAGGGCATTTAGCATACATCACCAGAGCACCAGGGTGTTCCCTGAAGTGATTGCTTAACACTTCACGAGGTATCTAGGGCTTTGGGAGACTGGTTTGGGGACTGTCCACATGTAAGGAATTTAGGATTTGGTCATAGTCTGTGGGACATTCACTCAGGATCCTTTTTCTTCAACTAACATCCTGCCTTTTACAGTACCTGTGATAGGAAGGCAAACTTCATGGTCCCAGCATTTGAATATCCAGCCCTAGGTTGGGAAGAGCAGTCCATAGGAAGTGCTAGGCTGCTGGCTGCAGCCTCTTACCAGTCCCTGACGAATCTGAGTAATTGCCTTTCAATGTCTGGGTCACCGTAGAGTGTGGCACATGGGACCTGCCTGGCCTTGCATTTTCTCCAGCTTCTTTGGGGCTTCTGTAGCAAGACTGCACCCAGATTCCTTCAGGAAGCCTTGCTCCTCAGTCTGCCACAGGCTTGGGGATGGAGTGCGATCTGCCTTGCCTGTTGGCCCCTCAGGCCTATCCTGTTTTGTCAGCGGGCTTGAGGGCATAAGGAGTCTTTTCTCACAGAGCTGAGGCCAAGTGTGTGAATGGGAATGAATGCAGCATGTGGCTCCGTGTCAGTCCTGAGACTGGAAGTGCCTGAGAGTGACTGACAGGTGGGAGGTGTCCTTCTGGAAAAGGAGCAAGTACCTTTGGTCACCCTGGAGTCCCGAGGGCACCACAGCATGCTGAAGGGCCGCCCTGGGTATGTCTGTGTGGCTGGGGCTGGGGCCAGGGGAGTCTAGCCAGCACAGGCCTGGGGGAGGAGAGGAAGGGTCAGGTGTGGAGGGAGCCTGAGTGGACAGAGCTGTGTGTGTTTATTTTATTTGGCTTCTCCACGGAGTGAAAAGGGAGGCATGAGTTGCCACAGAACCCTCTTGGCTTCCGAGCGACTGTTCATTTGGAGAAACAAGACAGGTTGGGGTAAAAAGCCCATCTTCATGGTGCAGAGTTTTTACTTCATCGTCCTGTCTCCTTTCTCGGACTTCCCTACAG
Seq C2 exon
CTCTGCTGTACAAGCCAATTGACCGAGTCACCCGGAGCACCCTGGTCCTTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000017631-Abr:NM_198018:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.476 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(12.7=100),PF104224=LRS4=FE(14.2=100)
A:
NA
C2:
PF0062115=RhoGEF=FE(10.8=100),PF104224=LRS4=PD(9.2=72.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: