RnoINT0011432 @ rn6
Intron Retention
Gene
ENSRNOG00000056837 | Abr
Description
ABR, RhoGEF and GTPase activating protein [Source:RGD Symbol;Acc:1306279]
Coordinates
chr10:64612493-64616753:-
Coord C1 exon
chr10:64616693-64616753
Coord A exon
chr10:64612546-64616692
Coord C2 exon
chr10:64612493-64612545
Length
4147 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTT
5' ss Score
8.4
3' ss Seq
CTTTCTCCGCCCTCCCACAGCTC
3' ss Score
10.93
Exon sequences
Seq C1 exon
GAACTCAAAGTGAAAGGACCCAAGGACTCTAAGGACAGCCACACATCAGTCACCATGGAAG
Seq A exon
GTACTTTGCGGAGTGGTCTGGGTTACAGTTGTCTTCCTTTGTTTTAGTGAACGGTGAGCTGTGTGAACGTGGTAGCCTCCCTGCCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGCCTGCCTCTCCTCCCTAGGCATCAGGCCAGCTACAAACGTGCTCCTCCTTAGGATGCCAGCAAGCTTTTGGTCCCTCCTCCCTCCCCTCCCTTTCTCCTCCTGCCTCTCCACGCTCTTGCCCTCCCCCTTGGATGAGCACTCGGAAGGAAGCGGCTGCTTGATTCTGGAGGTTGTGCAGCAGCAGCCAGCAAGGTGGCCGAGTGGCTGGTCTGCTGAGGAGAGCCAGGAGCCTGGAGCAATGGCTGCAGGTCCCTGCTGCAAGGATAGAGGTTGCCATGGAAATCCTACTCATCATCCGCTTCTGCTGTGACTGCACCTATGGTAACCAGGCACCCTCTGTGGGAAGTGGCATGCCTTCAGCCACCTGGGGGCTAGCTAGAACGGACTTCCATTCGGTCAGCAGGATTTAGGGGCTGCAGGGAAGGGAGGACGGTCGTGTTGTTGAGCCCACTTGCATTTGCTTTGTGGTCAGCCTGGAGTTGAAATCCAAAGGCTGTACTGAGTATCTTTGAAACGAAGGACCAGGCTAGAAAGGTCCAGGTCCTCCTGAGGCAGTGTGTGGGCCTGGTGGCTTAGCATGTGCGTGCATGAGAGGCATTGAGCAACTTCCTGAAGAGGCTAAGGAAAGTGACAGGCTGTCCCCTCAGGCTTGAGGGTGGGGCAAGGAGCAGCTAGGAGCAGGCAGAGAGGGATGGAGGGTCTGGAGAGCTGCACCTTGAGGTGAGAGGGTGCCAGCCTGGGCAGGAGGGAGAAGTTGGGAGTTTCTTTGTTTCATGAGCATGGAGGACGCTGGGCATCAAGGGTATTGTGTGCTCCGTGCACACGCTGCCTCCTCTCTGATGGCTTTGGGAGAGCAGGGAGGAGCCGGTTGGTTTCAGGAGCAGCATTTCCAGCCCCTAGTGACTCGACCTGAAGCCCAGGTCCCAGCACTCAGTGCAAAAGGACTGCATGCGAGGGGGGTGTGGCCGGCTGCTGCTTTGTGAAGGTCACACACCCACTTCAGTGGAAGGGACCCGGCACATCCTCTGTGCCACTCCTTCAGCTAGGGAGAGGAGGTATCCTGGGACAGGCACATGCTGTCAGTCAGGCTCCTTGTTCATAGGATACAGAAGCAGGTGCATGCAGGGAGTTATCCAGACCTGATAGGCCTTCTCTCTAAGGCAAGAAGTGCCTTAGGAGCCACCTCTGGTGGGGTACGAGGGGCTCATGTAAGCCCATGTGTGTCAAAGAGGCAGCTAGCTGGTTAAGGACCTTTCCTGTTCCTTCCTACCAGGCTCTTTGTCTTTACCCTTCTCAGTCGCTTTGCTTGCCTCCTATCTCCGTGGTAACCTGGGGCTCCTGTTACAGGAGCTGAGTTGGGGGTGGCAGTTTGCTGGAGGAAGGGTGATAGATGAGCTTCCCAGTTCTTTCTTAGAGGCCTGTATGTCAGCGAGCTGTTCAGGACCACCATCCCCCTCATCTTTACTGGCTTGTTCTGTGTCTGGTGCTCATGGTGGAATCAGCCTTTGTGCTGCCCTTCAGCTGATTCTGACAGGCTGGGGCCCAGGGAACTGTGGGACTTGATGGTCTGTCCGAGGTCAGGGGAGAAATGCCGGGCCTGGTTAAGTGTCTGTGCTGGTTTTCTAACACGGAGAAAAGAATCAGCCCTCTGCTCCCCCTTCCCTCCCTAGAAGGAAAAAGCTCTAATGAAGCAGGCCTGAGACCTGGAGTCCAGGGTCTCTTTGGTCCCCACGATTCCATAATCTTTGAAGTCTGCTTCAAAGTGGGGAGTAGCAAGTGCTCACCTGTGTGAGGGAGTCTTTCCCGGAACTCCTCCATGTGGAGTTCCATCGGCCACTCTCTCTTGAAGAAGGCAGTCCAGTTGTAAGTACGTGGGTGAGCCAAAATTCAAAATCCATCTACTTTTCACAGCTTTGTGATTTCAGGCAAGTAACTTGTGCCTGAGTTTCTGCACCATAAAGCTGAGTTAGTGAAAACTGTGTCCCCTTTTAGTGACAGGAAGCAGTGTGTGTAAGGCAGTTCCAGAACACGTGGTAAGAGAAGAGCTTGTTCATAATGGTGGTCTGACTTTTGGTGTTTATAAAGGTATGGTCAGGGAAGGCTTCCTGGAAGAGGAGGGAATGTGAGGCCTTTGATGGCTCCTGTCCCAGGAAGAGCAGGGAAAGCATGATACGGGAGCAGAGAATGGGCAGCCCTGCAGAGCCAGGAACACGGAAGGGGTGGCGGGGGCTTGTGGCACACAGAGGAGCACTCAGAACCAGGGGAACAAAGGCATGGGGGTGGGTACCCCTCTTTGCCTGATTTCCTTCCACGCACCTGATCCCCCTTGACCATGGAACACCAAGACTGTAGGATTCATTCCATGCCCCTGTCAGATGGACTCTTAAGGTGACTTCAGTCATATTAATAGCCCCCCCTGAAACCCGATCCACCATTTCTGCAGACTTCTGAGCTTAGAAACCTCTTTCTCCTGGGACCCAGAGAGGGCTGCAGAGGCTGATGTTTCAGTGTCAGCTTTCCTGGGGAGGGGACACTGGGCCCACCCCAGCCTGCGTCTGTTGACCTTGTGCCTGCCATGAGATCTCTCTCAGTGTTTCTACTATGAGTTCTCCCACTGCAGTGCAGATCCCTGAGCTACAGCTGGATGGGGTGCCTTGGACATCCTCAGAGGTGACACCCATGTGGATGCCCAAGCTTTACTCTCACTGTCACAGTGCACCCCAAACCCATGGATCTGCCATTCCATCCCCGTGGGCCATGGGGGTGGGGAGAGGGCTGCTAGAAATGGCTGGTTAAGAAAGAACGGGATTAAAACAGCATTCGTCAGCTGCTGATACATAGCCATCTCAGAAAAACAGCTTTTTTATCCTTTGGAGATCTTGGTTCAGTCGATGAAGTGTAGTGGGGGCATCCATTTCTTTTAAGAGCTTTCGTGTGATCCTAATGGGCGGCCAAGCGAACAAGGGCTACAGATAGGGCACTTAGCATACATCCTCAGAGCATGGGGTGTTCCCTGAACTGATTGCTTAACACTTCACAAGGTATCTAGGGCTTTGGGAGACTGGTTTGGAGGCTGTCCAAATGTGAGGAATTTAGGGTCTGGCTAGGTTCTATGGGACATTCAGTTAGGATCCTTTTTCTTCAACCAACATCCTGCCGTTTAGAGTACCTGTGACCGGAAGCCAGAAGTCACGGTTCTGGGATTTGAAGATCCAGGTGTGTAGGACCAGCCCTGAGTTAGGAAGAGCAGCCCACAGGAAGTGCTGGGCTGCTAACTGCAGCCTCCCTGATGCATCTGAGTAATCATCGTTGGCTGTCCAGGTCACAGAGGAGTGTGGCACATAGGACCTGCCTGGCCTTGGATTTTTTTCCAGCTTCTTTGGGGCTTCTGTAGCAAGACTGTACCCAGATTCCTTTAGGAAGCTTTTGCGCCTCAGTCTGCCTGCCGCTGGCTTGAGGATAGAGTGTTTTGGTGGTGATCTGCCGTGCCTCAAAAGGCCCCTCGGCCTATCCTGTTTTGTCAGCGGGCTTGAGGGCATAAAGAGTCTTTTCTCACAGAGCTGAGGCCAAATGTGTGAATGGGAATGAATGAAGCATGTGGCTCCCAGCTGGATGTGTCATTCCTGAGAGTGGAAGTGCCTGAGAGTGGCTGACAGGTGGGACAGATCCTTCTGGAAAAGTAGCAAGGGTCATCCTGAAGTCCCATGTGCTGAAGGGCCTCCCTGGGTACGTCTGTGTGGCTGGGGATGGAACCAGGGAGCTTCAGCTGTGAGAGCCTGACCAGCACAGGACTGGGTGAGGAGAGGAAGGTTCAGGTGGGGAGGGAGCCGGAGTGGACAGAGCTGTGTGTTTATTTTATTTGGCTTCTCCATGGAGTAGAGTTGCCGCAGAATTCACTTGGCTTCTGAGCGAGTGACTATTCATTTGGAGAAACAAAACAGGTTAGGGGTAAAAATCCTGTCTTCATGGTCCAGAGTTTCTACCTCATTGTCCTGTCTCCTTTCTCCGCCCTCCCACAG
Seq C2 exon
CTCTGCTGTATAAGCCTATTGACCGAGTCACTCGGAGTACCCTGGTCCTGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056837:ENSRNOT00000080703:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.536 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(10.6=100)
A:
NA
C2:
PF0062115=RhoGEF=FE(9.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]