HsaINT0001907 @ hg19
Intron Retention
Gene
ENSG00000159842 | ABR
Description
active BCR-related [Source:HGNC Symbol;Acc:81]
Coordinates
chr17:976865-982630:-
Coord C1 exon
chr17:982570-982630
Coord A exon
chr17:976918-982569
Coord C2 exon
chr17:976865-976917
Length
5652 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCT
5' ss Score
8.49
3' ss Seq
CTCCCTGTCTCCCCCGACAGCTC
3' ss Score
11.68
Exon sequences
Seq C1 exon
GAACTCAAAGTGAAAGGTCCCAAGGACTCCAAGGACAGCCACACGTCTGTCACCATGGAAG
Seq A exon
GTACCTCGGGGAGCGGGCTGGATTACAGGCACCTACCTTTGTCTGGCTGTGCAGGCAACAGGCTGCGTGAACGCGGCGCCCTTCCCCTTGTGTGTGCGTGTGTGTGAGCGCGTGTGAGCGTGAGCGTGTGTGAGCGCGTGTGAGTGTGAGCTGAGTGCGCGTGTGCGCGCACGCGAGGACTCTAGCCTCGTGCCCAGGCAGCCAGCCAGCTACAAACGTGCTCCTCTTTAGGATGCCAGCAGGCTGCTGGCTCCCTCCCTCCCTACCCCTCCTCCCCTTCCCCTTCCCTCCTCTCCTCGCCACGCGCCTCCCTCCCCTCCCCCTTGCTGGAAGAGCACTCCGGAGCGGCTGCCCGATGCTGGAGTCCGTGCGGCAGCATCAGCAAGGTGGCTGAGTGGCCGGGCTGCTGGTGGGCGCCGGGGAGCCTGGAGCGATGGCTGCACGCTCCCGCCGCGGGGACAGAGGCTGCCATGGAGATTCTCCTCATTATTCGCTTCTGCTGTAACTGCACCTATGGTAACCCAGGTGCTCGCTGTGGGAGGTGGCGGACCCTCCCACCTCTGGGGGCCGGCTGGAGTGGGCTTAGATGTGGCCGGGGAGGTTAGAGGGCCGCAGGGAAGGAGGGTGGGCGAGCGGCTGGACCTGAATTCCCCCTTCGTTTTGGCGGCATCCAGCCTAGAGTTGAAACCTGGGGGCTGCTCAGAGCAGGGCCGCTTGCAAATGGAAGGACCAGGCTGGAGGGGTCCAGGTGGCCCCGAGGATCGGTGGGGAATTGGTGGGCTAGTGTGAGAGAACTTCCTGGAGGGGCTGTTAGGGAGAGACGGCGACGAGCTGTGCCCGCAGACGTAGTAGCCCTGAGGCCAGGGAGAGGGTCTGCGGGGGCCAGGCACAGCGTGGCGATGGGTGGCGATGGTCCGGACGGCGGCGTTGCCAGCCGAGAGGGTGCCAGCGCGAGCCAGAGGGAGAAGTTGGGAGTTTCTTTGTTTCTGGAGAGAGGCGCGGAGGCTGGGCGGCACGGTATTGTGTGCTCCGCGCACATGCAGCAGTAGGCGGAGGACACGGAGGGGCTGTGGGAGCAGGAAGGAGAGGTTTGTTTCCAGCCGTGAGAGACCCCCAGCCGAGGTCTGGGCCCTCAACTGTGGAAGGCAGGTCGGCAGGGCCAGCGGGAGAGGGGTGTGGCAAGCTACTCTGTGAAGGTCACACACACACACACACACACACACACCACCTTTCGGTGGAAGGGACCCGGACCATCCTCCTTGCAGCTCCCGCAGCTGGCTGGGGGCTGGGGGGAAGTCCCGGGACAGGTGCATGTCATCAACACGACTGTCGGTCGTAGGAGGATGAAGCCGGCCCAGGTAGGGAGGTGTCCAGAAGCCCGTGGACCCTGCCTCAAGAGGCAAGACGTGCCAAGGGGTGCCCTGCCTGCCTGTGGCAGGGAGTGGGGTGGGCACGTGTGGCTCCCAGGCCGGCTGCTCTGGGCCTGAGTCTGTGGGAGCAGCAGGCGGCTGGTTTTAGGACCTTCCTCTTCCTTCCCACCAGGTGTTTCGGCTCTGCACCCTTCTCAGTCACTTTGCTTTCCTATCTCCCTGGTAACCTGGAGCTCCTTGGAGCTCCTTGTCGAAGGCTGACTTGAGGGGGATGGTGGCTTGCCGGAAGAGAGATGGCAGGTTTCCTGGGCTCCTTCCCAGGGGCGGCTGTGCTGGAGGGGCTGTGTGGGGCCAGTGCCCCCTGACCTTCTCAGGACCCTCTTGATGGAAGCAAGCTCTGAGGCAGCCTCTCTCCTGCGGCCCAGCAGGGCGGCTGCAGGAACCCTGTTCTCACTTGAAATTGGCCTGGTCAGCGATCAGAGGAGAAATGGTCTTTTTGGTCTGGCCTAGGAGTTGGTCAGGTCTTGACTCTGCCTCCCTGAAAAGGAAACGTACCCTTGGCTTCCTCTCCCTTCCCCAAAAGGAAGCTTCGACTCAGTGAAACGGACCTGGGACCTGGAGTTCACGTTGCTTCGGTCTCCGTGATACTGTTGTTGAAGTCGGCTTCAAAGTGGGGAATGAGGAGTGAAAGGGCCAGCTCGTGAGGAGGGGGCTCACCCCATCCTGGTCACTCTTTCCAAGAACGCTCCTGTGGTTCATTGAGGTTTTACAGGTGCTGCCTTTCCCTGAAGAAGGTGCAGCTCAAAGCAAGGAGTGCGGGTGGATCTACCCAGCTCCCACCACTTGTAGCCACAAGTCTCTGGCCTCAGTTGCCTTGTCTGTAAAATGGGGCTAGTGAGAATTGCTTCCCGTTTTAATCACAGGAAATAATGAGAGCAAAGCAGTTAACTCAGTACCCTTGGGCACAGAGCGAGTACCCAGCAAACTAGAGAGAGACCAGCTTGCTGCCCAAGTCAGTGTCAGTGGAGAGGGAGAGTGGGTGAGGCCGGGCAGGAAGCAGGCCAGCCTGCAGGAGCCCAGGGACAGGGGAAGGGCCAGAGCGAGTGCCTCACCCTGAGTTCTCAGGGGACCCCAGCGTGCAGGGGCCGTGGGGAGCACAAACTTCAGGGCCGCTCTTATTCCCCCGGTTCCCTCCGTATCTGATGTGGTCCCAGTGCCGCCACCCCCCCCACCCCCACCCCCCCCGTGCACCTGCCCTCCTGGCCGCCCTTCCAGGGCTCATTCCACAGCCTTACTCAGGTGGACTCTGGAGGTGACCACAGACATGTTAATAACCCCTCTGAAACCCAACCTGCCATGTGTTCAGACCTCTGAGCTTAGTCAGAAACCTCTTCCTCTTGGGACCCAAGAGAGGGCTGCGGGGAGCCGATAATGCAGTGTCAGCTTTCTGTGGAGCCGCCACTCCGGAGCCCACCCTGGCAGGTGTCTGCTGAGCTTGTGCTTTCTTTTGGGTCTCTGGGGTTCTCCAGTGTGATTTTTTCCCCCTGAAGATGGGCTGAGCCACAGGTGGGTGCCTTAAACAGCCTCAGAAATGGATCCCACCTGAGCTAGGACCTGGGCTGCACCCTCAGTGCCGAGGATACCCCAAGACTGGCCTCATTCCTTCAAGCTTCCATGGCCCATGGGGAGGGTCTCTGGAAACTGCTAGATAAGAAAGGGCTACAGATATGTCATATGAAGTGTATTTACGTAAACCAGTGGTTGGCCGGGTACTCATGCCTGTAATCCCAACTTTTGGCAGACTGAGGCAGGAGGATTGCTTGAGGCCAGGAGTTCGAGACCAGCTTGTATTTGGCTTGAGGCCAGGAGTTCGAGACCAGCAACATAGTGAGACCTTGTCTCTATATTTATTTTTATTTAAACGAAGACTCACTGTGTCGCCCAGGCTGGAGTGCAATGGCGCAATCTCAGCTCACTGCAACCTCTGCCTCCTGGATTCAAGAGATTCCCCTGCCTCAGCCTCCCAAGTAGTTGGGATTATAGGCGCCTGCCACCACACCTGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGTTCTTGAACTCCTGACCTCAAATGATCCACCCGCTTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCCTGCCCGGCCCCTCGTCTCTATATTTTTAAAAAAATTAAAATAAATACATAAATAAAACATAAAGCAGTGGTTTTCAACCATTATTATACATTCAAATCAGTAAAGAAGCTTTATAGAAATGCTGATGGCCCTTGTGGTCTTGCAGAGATTTGGGTTGAGTTGACGGGGCTGGGGAGCAGCATCTGTATCTTTTAACCGCTCCCCCAGTGATTCCGACAGGCAGCCAAGCTCGGACTGCGGGTAAGGCTGGTGGCCCTGCTGAGGCTGCATTTTCTTCACAGCCAGCAGATTGCTCCCTGAAGTGTCTGCTTAGCCGCGCACGGGGTATTTATATCTCAGGCTTTGGAGAACTATCAGGTTTGGGGCCCGGCTAGGGCGTGCGTGTTCACGCTGGGACCTGTCACAACCTGGTCTTATGGGACACCCAGTCTGGGATCCTTCTTCCCAGATGACCAACCTGCCTCTGTCACTGCCCCTGCGGCAGGAGGCCCAAGGTCATGACCCCAGGGACAGAGCATCCAGGTGCAGGACTGAAGCTGAGCCTCCTGTTGGGAGGGTGGGCGCAGCCGCGTACAGGAAGGGTGTTGGGAAGTGTTGATCCACCAGCTGCCACCTCCACCTGTCCCTGCTGAATCCCAGCCATCCTCACTTGGTGTCCGGGTTGTGGAGGGTGTGGCTCTTGGGGGCCTGGGCTGGCCTTGCCTGCGTCCTCCCAGCCTCTTTGGGGCTCTCATATGTGAGGCCTAACCTGAGTTGCTTCAGGAAACCTTTGCCCCTCAGGCTGCCACGTGTTTGAGAGCACAGCCTTTTTTCTTTTTTTTTGAGATGGAGTTTTGCTCTTGTTACCCAGGCTGGAGTGCAGTGGCATGATCTTGGCTCGCTACAACTTCCGCCTCCCGGGTTCAAGTGATTTCCCTGCCTCAGCCTCCCAAATAGCTGGGATTACAGGCATGTGCCACCACGCCTGGCTAATTTTTGTATTTTTAATAGAGATGGGGTTTCACTGGTTGGCCAGGCTGGCCTCGGGGAGCAGAGCCTTTCTGTGGAGATCAGGCCAGCCTCCTGGCCTCCAGCCTCCCTGCCTCCAGCCTTCCTGTGCTTTGCTATCTGGGGTTTGAGGATGTGGGGAGGGGTCTTTCCTCTGAGAGATGAGGCCAGTCCTGTGGATCACAGTGAGGCATGCCAATCCCAGCTGGCTGTGCCTGGCCTTCAGCTCCAGGAGCCTGAGAATGATAAGGTCTGGAGAGCTGCCCTTCCTGGAAACACAGCATGTCTCCTTCCCCCATTCTGGGGTCCTGCATGTGGCAGGTGTGCTAGACTCTGCAGGGCATGGCTGGGTGGAGCTGTGTGATTCTGGGGTTCTGCGTGTGGCAGGTATGCTGGACTCTGCGGGGCGTGGCTGGGTGGAGCTGTGTGATTCTGGGGTCCTGCATGTGGCAGGTGTGCTAGACTCTGCAGGGCATGGCTGGGTGGAGCTGTGTGATTCTGGGGTTCTGCGTGTGGCAGGTGTGCTGGACTCTACGGGGCGTGGCTGGGTGGAGCTGTGTGATTCTGGGGTCCTGCGTGTGGCAGGTGTGCTAGACTCTGCGGGGCGTGGCTGGGTGGAGCTGTGTGATTCTGGGGTCCTGCGTGTGGCAGGTGTGCTGGACTCTTCGGGGCGTGGCTGGGTGGAGCTGTGTGATTCTGGGGTCCTGCGTGTGGCAGGTGTGCTGGACTCTTCGGGGCGTGGCTGGGTGGAGCTGTGTGATTCAGGGCTGGGGGTCCAGGAGAGCATCTGCCTTGAGCCAGGTGAGGCCAGGACAGGCCTGGGGAGGGGGGCGGGGCGGCTCTCGATGAAGCCATGTCTGATGGGAGAGGAGGCAGGGCTGCGGAGGGAGCAGGGGCTGCCAGGGCTGTGTGTCACCTGTGTCTGCTGTTTGGTCGGCCCGGGGAGTGAGAACAGAGGTGGGGGCTGCCGTGGGCTCACTCTGGTGTCCCTCGAGGGGTGTTCACGTGGGAAGCATGCGGGTGGGGGGACGAAGCTGGTCTCTGGGGTGTTGGGTTGCCCTCGTCCATCATCCTCTTCCTCCTTCTCCCTGTCTCCCCCGACAG
Seq C2 exon
CTCTGCTCTACAAGCCCATTGACCGGGTCACTCGGAGCACCCTAGTCCTACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159842-ABR:NM_001092:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.437 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(12.2=100),PF104224=LRS4=FE(14.1=100)
A:
NA
C2:
PF0062115=RhoGEF=FE(10.4=100),PF104224=LRS4=PD(10.6=83.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)