GgaINT0132806 @ galGal4
Intron Retention
Gene
ENSGALG00000004364 | ABR
Description
active BCR-related [Source:HGNC Symbol;Acc:HGNC:81]
Coordinates
chr19:6326543-6328071:+
Coord C1 exon
chr19:6326543-6326603
Coord A exon
chr19:6326604-6328018
Coord C2 exon
chr19:6328019-6328071
Length
1415 bp
Sequences
Splice sites
5' ss Seq
AGGGTACGG
5' ss Score
7.86
3' ss Seq
ACACCTTGTGTCTCCCACAGCGC
3' ss Score
11.28
Exon sequences
Seq C1 exon
GAGCTGAAGGTGAAAGGCCCCAAGGACTCGAAGGAGAGCCACACGTCCGTCACCATGGAGG
Seq A exon
GTACGGCATGCGAGGGGCGGGCGTGGGGAGGGGGCTGCAGCCTTTTGTCTGCGGGTGCATTAGCAAGCAGCTCCCGGCAGCGGAGCCCTTTTGCGTTCCCATGCGCAGCGCTGGCACTGAGTAGGGGGGGACGCCCCTCGCGAGGATGCTGGGGCGTGCAGCAGCCCCCCACCCCCTGCCCACCCCCTCCTCCTGCGCTGGGAGCTGTGCTGAGGGCCGATGCCGTGGCGCAGCAGCTGGGCTGAGCTGCCGAGGGGAGGCAGGGATGGCTGCGCGGAGAAGGGGCTGCCATGGAAATCCTCGTTATCATCCGGCTTTGCTGTAACTGCACCTACGGTGAGGGCTGGCGCGGGCTGTGGTGCGGGGGGAGCGTTTCACCTGCTGCGGGGCCGACGTCTTTACGGGACGGTGGTGGCTTTGTGCTCTGCAGCCTGAAGTTGGGTGCTTCTTTGTTCTGGGCTCTGTCGATCCGCCTGGCTCTGGCAGCGTGGCCACGCGCTCACATGGCCCATGGGGCTCGTGTTGGTGGCGGAGATGGGGAGAGAGCTGCTCAAGGGGGCTCTGCGCGGAGATTGTGAGGAGGAAGGGTCTTCCTTTTCCTCGCTGGATGCTGTGAGCATCTTGAGGCTGTGACACCCTTCTTGGCTCCGTGCCTCTCTGCCTGCTGTCATCCAGCCCCCGGGGACCGCGGTGTTGGGATGGTGCTGGAGAGGGGGTTGGCGCTGTGCCGGATCAGCCCATCCTGGGGACGCGTTGGGCTCCCAGGTGCTTTGCGTGTGCCCGTAGTGATGGCAGCAGGAGGCTGTGTCCTCCCCGTGTGCAAGGCGGGGCGGCACCCTGAGCGTCCCCTCCCTCCTGGCTCTCTCTGAGTGCTGCAGGAACTCCAGCTTTCCGTGCTGCCACCGAGGTGTGGGGAAGTGGCTGCAGTGGGGGACAGTCCCGTGTCCTCTCCCAGACAGCGGGGTCCTTCCCTTGTCACCTGGGGCTGTCAGACAGCACCCTCCTCCAGGCTCCCTGTGAGCTTCTCCATGACTCATAATGTGGTGCAGGGTCAGCACGTTTCCCTCTTCCTCTCCCGGTTGCAGTTCTTCCCCACTGGGGCTCTGCAATTTGAGGAAGTGATCCAAATCGCTGGGAAAATCCAGATGCCTCAGTCTGGGTATAAATAGCCCAGAGGGATGTGCAAGCAACCAGCTGTGGGGTGCTGGGACCCAACACCACGAGGGGATGAGGGGAAGGAAGGTCCTGCTGCTGGGGCTGAAGGGAGCCCCAGAACATCTCGTTGGGTGAGCAGGGCTGGGGAAGGTGCTGCACGGGACCCAGCATGGAGCAAAAAGGGAAACTGAGAAAGATTCTGGTTGTGAGGGGCTGAGCTCCCACAGGCAGTGCCAACTGACACCTTGTGTCTCCCACAG
Seq C2 exon
CGCTGCTGTACAAACCCATTGACCGTGTCACCCGGAGCACCCTTGTTCTGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004364:ENSGALT00000006958:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(10.6=100)
A:
NA
C2:
PF0062115=RhoGEF=FE(9.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]