HsaINT0001907 @ hg38
Intron Retention
Gene
ENSG00000159842 | ABR
Description
active BCR-related [Source:HGNC Symbol;Acc:HGNC:81]
Coordinates
chr17:1073625-1079390:-
Coord C1 exon
chr17:1079330-1079390
Coord A exon
chr17:1073678-1079329
Coord C2 exon
chr17:1073625-1073677
Length
5652 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCT
5' ss Score
8.49
3' ss Seq
CTCCCTGTCTCCCCCGACAGCTC
3' ss Score
11.68
Exon sequences
Seq C1 exon
GAACTCAAAGTGAAAGGTCCCAAGGACTCCAAGGACAGCCACACGTCTGTCACCATGGAAG
Seq A exon
GTACCTCGGGGAGCGGGCTGGATTACAGGCACCTACCTTTGTCTGGCTGTGCAGGCAACAGGCTGCGTGAACGCGGCGCCCTTCCCCTTGTGTGTGCGTGTGTGTGAGCGCGTGTGAGCGTGAGCGTGTGTGAGCGCGTGTGAGTGTGAGCTGAGTGCGCGTGTGCGCGCACGCGAGGACTCTAGCCTCGTGCCCAGGCAGCCAGCCAGCTACAAACGTGCTCCTCTTTAGGATGCCAGCAGGCTGCTGGCTCCCTCCCTCCCTACCCCTCCTCCCCTTCCCCTTCCCTCCTCTCCTCGCCACGCGCCTCCCTCCCCTCCCCCTTGCTGGAAGAGCACTCCGGAGCGGCTGCCCGATGCTGGAGTCCGTGCGGCAGCATCAGCAAGGTGGCTGAGTGGCCGGGCTGCTGGTGGGCGCCGGGGAGCCTGGAGCGATGGCTGCACGCTCCCGCCGCGGGGACAGAGGCTGCCATGGAGATTCTCCTCATTATTCGCTTCTGCTGTAACTGCACCTATGGTAACCCAGGTGCTCGCTGTGGGAGGTGGCGGACCCTCCCACCTCTGGGGGCCGGCTGGAGTGGGCTTAGATGTGGCCGGGGAGGTTAGAGGGCCGCAGGGAAGGAGGGTGGGCGAGCGGCTGGACCTGAATTCCCCCTTCGTTTTGGCGGCATCCAGCCTAGAGTTGAAACCTGGGGGCTGCTCAGAGCAGGGCCGCTTGCAAATGGAAGGACCAGGCTGGAGGGGTCCAGGTGGCCCCGAGGATCGGTGGGGAATTGGTGGGCTAGTGTGAGAGAACTTCCTGGAGGGGCTGTTAGGGAGAGACGGCGACGAGCTGTGCCCGCAGACGTAGTAGCCCTGAGGCCAGGGAGAGGGTCTGCGGGGGCCAGGCACAGCGTGGCGATGGGTGGCGATGGTCCGGACGGCGGCGTTGCCAGCCGAGAGGGTGCCAGCGCGAGCCAGAGGGAGAAGTTGGGAGTTTCTTTGTTTCTGGAGAGAGGCGCGGAGGCTGGGCGGCACGGTATTGTGTGCTCCGCGCACATGCAGCAGTAGGCGGAGGACACGGAGGGGCTGTGGGAGCAGGAAGGAGAGGTTTGTTTCCAGCCGTGAGAGACCCCCAGCCGAGGTCTGGGCCCTCAACTGTGGAAGGCAGGTCGGCAGGGCCAGCGGGAGAGGGGTGTGGCAAGCTACTCTGTGAAGGTCACACACACACACACACACACACACACCACCTTTCGGTGGAAGGGACCCGGACCATCCTCCTTGCAGCTCCCGCAGCTGGCTGGGGGCTGGGGGGAAGTCCCGGGACAGGTGCATGTCATCAACACGACTGTCGGTCGTAGGAGGATGAAGCCGGCCCAGGTAGGGAGGTGTCCAGAAGCCCGTGGACCCTGCCTCAAGAGGCAAGACGTGCCAAGGGGTGCCCTGCCTGCCTGTGGCAGGGAGTGGGGTGGGCACGTGTGGCTCCCAGGCCGGCTGCTCTGGGCCTGAGTCTGTGGGAGCAGCAGGCGGCTGGTTTTAGGACCTTCCTCTTCCTTCCCACCAGGTGTTTCGGCTCTGCACCCTTCTCAGTCACTTTGCTTTCCTATCTCCCTGGTAACCTGGAGCTCCTTGGAGCTCCTTGTCGAAGGCTGACTTGAGGGGGATGGTGGCTTGCCGGAAGAGAGATGGCAGGTTTCCTGGGCTCCTTCCCAGGGGCGGCTGTGCTGGAGGGGCTGTGTGGGGCCAGTGCCCCCTGACCTTCTCAGGACCCTCTTGATGGAAGCAAGCTCTGAGGCAGCCTCTCTCCTGCGGCCCAGCAGGGCGGCTGCAGGAACCCTGTTCTCACTTGAAATTGGCCTGGTCAGCGATCAGAGGAGAAATGGTCTTTTTGGTCTGGCCTAGGAGTTGGTCAGGTCTTGACTCTGCCTCCCTGAAAAGGAAACGTACCCTTGGCTTCCTCTCCCTTCCCCAAAAGGAAGCTTCGACTCAGTGAAACGGACCTGGGACCTGGAGTTCACGTTGCTTCGGTCTCCGTGATACTGTTGTTGAAGTCGGCTTCAAAGTGGGGAATGAGGAGTGAAAGGGCCAGCTCGTGAGGAGGGGGCTCACCCCATCCTGGTCACTCTTTCCAAGAACGCTCCTGTGGTTCATTGAGGTTTTACAGGTGCTGCCTTTCCCTGAAGAAGGTGCAGCTCAAAGCAAGGAGTGCGGGTGGATCTACCCAGCTCCCACCACTTGTAGCCACAAGTCTCTGGCCTCAGTTGCCTTGTCTGTAAAATGGGGCTAGTGAGAATTGCTTCCCGTTTTAATCACAGGAAATAATGAGAGCAAAGCAGTTAACTCAGTACCCTTGGGCACAGAGCGAGTACCCAGCAAACTAGAGAGAGACCAGCTTGCTGCCCAAGTCAGTGTCAGTGGAGAGGGAGAGTGGGTGAGGCCGGGCAGGAAGCAGGCCAGCCTGCAGGAGCCCAGGGACAGGGGAAGGGCCAGAGCGAGTGCCTCACCCTGAGTTCTCAGGGGACCCCAGCGTGCAGGGGCCGTGGGGAGCACAAACTTCAGGGCCGCTCTTATTCCCCCGGTTCCCTCCGTATCTGATGTGGTCCCAGTGCCGCCACCCCCCCCACCCCCACCCCCCCCGTGCACCTGCCCTCCTGGCCGCCCTTCCAGGGCTCATTCCACAGCCTTACTCAGGTGGACTCTGGAGGTGACCACAGACATGTTAATAACCCCTCTGAAACCCAACCTGCCATGTGTTCAGACCTCTGAGCTTAGTCAGAAACCTCTTCCTCTTGGGACCCAAGAGAGGGCTGCGGGGAGCCGATAATGCAGTGTCAGCTTTCTGTGGAGCCGCCACTCCGGAGCCCACCCTGGCAGGTGTCTGCTGAGCTTGTGCTTTCTTTTGGGTCTCTGGGGTTCTCCAGTGTGATTTTTTCCCCCTGAAGATGGGCTGAGCCACAGGTGGGTGCCTTAAACAGCCTCAGAAATGGATCCCACCTGAGCTAGGACCTGGGCTGCACCCTCAGTGCCGAGGATACCCCAAGACTGGCCTCATTCCTTCAAGCTTCCATGGCCCATGGGGAGGGTCTCTGGAAACTGCTAGATAAGAAAGGGCTACAGATATGTCATATGAAGTGTATTTACGTAAACCAGTGGTTGGCCGGGTACTCATGCCTGTAATCCCAACTTTTGGCAGACTGAGGCAGGAGGATTGCTTGAGGCCAGGAGTTCGAGACCAGCTTGTATTTGGCTTGAGGCCAGGAGTTCGAGACCAGCAACATAGTGAGACCTTGTCTCTATATTTATTTTTATTTAAACGAAGACTCACTGTGTCGCCCAGGCTGGAGTGCAATGGCGCAATCTCAGCTCACTGCAACCTCTGCCTCCTGGATTCAAGAGATTCCCCTGCCTCAGCCTCCCAAGTAGTTGGGATTATAGGCGCCTGCCACCACACCTGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGTTCTTGAACTCCTGACCTCAAATGATCCACCCGCTTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCCTGCCCGGCCCCTCGTCTCTATATTTTTAAAAAAATTAAAATAAATACATAAATAAAACATAAAGCAGTGGTTTTCAACCATTATTATACATTCAAATCAGTAAAGAAGCTTTATAGAAATGCTGATGGCCCTTGTGGTCTTGCAGAGATTTGGGTTGAGTTGACGGGGCTGGGGAGCAGCATCTGTATCTTTTAACCGCTCCCCCAGTGATTCCGACAGGCAGCCAAGCTCGGACTGCGGGTAAGGCTGGTGGCCCTGCTGAGGCTGCATTTTCTTCACAGCCAGCAGATTGCTCCCTGAAGTGTCTGCTTAGCCGCGCACGGGGTATTTATATCTCAGGCTTTGGAGAACTATCAGGTTTGGGGCCCGGCTAGGGCGTGCGTGTTCACGCTGGGACCTGTCACAACCTGGTCTTATGGGACACCCAGTCTGGGATCCTTCTTCCCAGATGACCAACCTGCCTCTGTCACTGCCCCTGCGGCAGGAGGCCCAAGGTCATGACCCCAGGGACAGAGCATCCAGGTGCAGGACTGAAGCTGAGCCTCCTGTTGGGAGGGTGGGCGCAGCCGCGTACAGGAAGGGTGTTGGGAAGTGTTGATCCACCAGCTGCCACCTCCACCTGTCCCTGCTGAATCCCAGCCATCCTCACTTGGTGTCCGGGTTGTGGAGGGTGTGGCTCTTGGGGGCCTGGGCTGGCCTTGCCTGCGTCCTCCCAGCCTCTTTGGGGCTCTCATATGTGAGGCCTAACCTGAGTTGCTTCAGGAAACCTTTGCCCCTCAGGCTGCCACGTGTTTGAGAGCACAGCCTTTTTTCTTTTTTTTTGAGATGGAGTTTTGCTCTTGTTACCCAGGCTGGAGTGCAGTGGCATGATCTTGGCTCGCTACAACTTCCGCCTCCCGGGTTCAAGTGATTTCCCTGCCTCAGCCTCCCAAATAGCTGGGATTACAGGCATGTGCCACCACGCCTGGCTAATTTTTGTATTTTTAATAGAGATGGGGTTTCACTGGTTGGCCAGGCTGGCCTCGGGGAGCAGAGCCTTTCTGTGGAGATCAGGCCAGCCTCCTGGCCTCCAGCCTCCCTGCCTCCAGCCTTCCTGTGCTTTGCTATCTGGGGTTTGAGGATGTGGGGAGGGGTCTTTCCTCTGAGAGATGAGGCCAGTCCTGTGGATCACAGTGAGGCATGCCAATCCCAGCTGGCTGTGCCTGGCCTTCAGCTCCAGGAGCCTGAGAATGATAAGGTCTGGAGAGCTGCCCTTCCTGGAAACACAGCATGTCTCCTTCCCCCATTCTGGGGTCCTGCATGTGGCAGGTGTGCTAGACTCTGCAGGGCATGGCTGGGTGGAGCTGTGTGATTCTGGGGTTCTGCGTGTGGCAGGTATGCTGGACTCTGCGGGGCGTGGCTGGGTGGAGCTGTGTGATTCTGGGGTCCTGCATGTGGCAGGTGTGCTAGACTCTGCAGGGCATGGCTGGGTGGAGCTGTGTGATTCTGGGGTTCTGCGTGTGGCAGGTGTGCTGGACTCTACGGGGCGTGGCTGGGTGGAGCTGTGTGATTCTGGGGTCCTGCGTGTGGCAGGTGTGCTAGACTCTGCGGGGCGTGGCTGGGTGGAGCTGTGTGATTCTGGGGTCCTGCGTGTGGCAGGTGTGCTGGACTCTTCGGGGCGTGGCTGGGTGGAGCTGTGTGATTCTGGGGTCCTGCGTGTGGCAGGTGTGCTGGACTCTTCGGGGCGTGGCTGGGTGGAGCTGTGTGATTCAGGGCTGGGGGTCCAGGAGAGCATCTGCCTTGAGCCAGGTGAGGCCAGGACAGGCCTGGGGAGGGGGGCGGGGCGGCTCTCGATGAAGCCATGTCTGATGGGAGAGGAGGCAGGGCTGCGGAGGGAGCAGGGGCTGCCAGGGCTGTGTGTCACCTGTGTCTGCTGTTTGGTCGGCCCGGGGAGTGAGAACAGAGGTGGGGGCTGCCGTGGGCTCACTCTGGTGTCCCTCGAGGGGTGTTCACGTGGGAAGCATGCGGGTGGGGGGACGAAGCTGGTCTCTGGGGTGTTGGGTTGCCCTCGTCCATCATCCTCTTCCTCCTTCTCCCTGTCTCCCCCGACAG
Seq C2 exon
CTCTGCTCTACAAGCCCATTGACCGGGTCACTCGGAGCACCCTAGTCCTACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159842:ENST00000302538:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.417 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(10.6=100)
A:
NA
C2:
PF0062115=RhoGEF=FE(31.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development