BtaINT0015858 @ bosTau6
Intron Retention
Gene
ENSBTAG00000025161 | AGPAT2
Description
Bos taurus 1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta) (AGPAT2), mRNA. [Source:RefSeq mRNA;Acc:NM_001080264]
Coordinates
chr11:104138238-104146412:-
Coord C1 exon
chr11:104146273-104146412
Coord A exon
chr11:104138372-104146272
Coord C2 exon
chr11:104138238-104138371
Length
7901 bp
Sequences
Splice sites
5' ss Seq
GAGGCAAGG
5' ss Score
2.53
3' ss Seq
TGGGCCCGTCTCCCCCGCAGGAT
3' ss Score
10.59
Exon sequences
Seq C1 exon
CTGCTGCTGGCGCAGCTGAGCCGCTCGGCCCGCTTCTACGCCAAGATCGGCCTGTACTGCGCCTTCTGCTTCACGGCCTCGGCGATGGCCGCGGTCGTCTGCCTGCTGCGCCACGGGGGCCGGACGGTGGAGAACATGAG
Seq A exon
GCAAGGGGGGCCGGGCGGGCGCGGGGGGGCCGCTTCCGCTTCCCTAACTTTCCCGTGTCCTTTCCCTCCTTCCTGCCGCGCCCGCCTCTCCAGGGCTCCGGGAGTGGCGGGAGGGGGCTGGGGCGGGGGTGGGGGGGGTGCGGCGCTCCCTACGCCCGAGGGAAAAGCGGGTCGGGGAGCGCGCCGAGGGGTGGTGGTGGGTGGGCTGCGGCCTCCGGAGCCCGCGTCGCCGTGTCCCCGCACCCTTGCCCCGGGACCCCGGCCAGGGGCCGACACGGAGGGCTTTACAGAGATCTGTCTCTCGGCGCCGCGCAGGGTGCTGGGCCGGCTCCGAGAGGAATGCGGCCGGGCCGGGTGGGCAGAGGCTCGGTGCCGCTTCCCGTGGCGGGGGGTGGGGGCTAGCCGCCGTGCACCGCCGCGCCGGGGTGTCTCAGTCTCCTCCCCGCCATCCCGCCCGCCCACCTGTCGGGCGATGAGCGCACCTGTGCTCAGCCTCTTCCTTCCGCTTAGGAAGGTGTGGTGGCTCCAGCCCGCGGAGGTTGGGCGGGGACTGCTGACCCTTGGGGTCCAAGCTTTAAGCCAGGGGAAAGAACACGGTGGTGGCTGGGGTGTCCCCCCTCCCATCCCCGGGGCTGGGGAGCTTGCTGCGGTAGGGGTCAGGCTGGGCTGACAGGAAGAGATGGCGATCTCTCCCGGGCAGGGGCAGGGGCTGGGGAGGGCATGGTGGCCCGAGAGGGGCTCCTTGGCCCTTTCCCCAGATTCCGATGGGGAGGGGCCATTGCTAACATGCCACCCTGTGGCTTTGGCAATGATGGCCTTTTGGCCGTGGCCTGGGGTGGGAATACTGTGGTCCCTGAGGCCCCCACTACCCCAGCACTCACAGGGCAGGGGGTGAGGGGTCCTGGCTTTCTGCCCTTCCCGGCCTTGTCCATCCGATGGGCTGACGCTGCCAGACTGGCCTGCTCTGCACAGTTCTCCCCAGCTGTTTTCAGGGATTTGTGGCTCCCGCTGCCCCAGGAATGGGCGGGAGGACTAAGAGTGGGGAAGACTGGTGGGTGGGCCATGGGTCTCCAGTGCCTCCCCTGCCCTCCCCCGCCCCACGTGGCCCAGGGCAGCAACCCAGGGAGCAGAGATCACAGGGGTGGCCCACTTGTTGCCTTTCCAGCTGTCTTCCCAAGCAGTCAGCTCTCTGGGATGGGGAGGGCCTGTGTCCAGAAATAGGGGGTTCCTCAGGGCTGGGCCCTGCCGGCAGGGATGCTGGCCTGAGTTTGAGGCCCTGGGACCCCCTGCAGACAGTGGGCTCACAGCCCGTGTCCGTTCCACACCTGCTGGGGGCCAGCCAGGAGCGGGGCAGGGGGTGGTTTCCGGCAACAAGGGCTGGTGGGCTCCTCGGAGGGGCAGCTGCCCTCCCACAGCCAGGCCCGAGGGTGGCACGTCTGTTTCTGAGGCAGGAGGGGGCCCTGAGCCTGGCTTGTGCTGCGTGCGGGTGGGAAGCGAGTCCTGGAGCAGGCTTTCAGCAGGCGTTCCCAGTGGTCACCCTCTCTCTCCCTGGCTCTGTGTGGTCAGGTAGCCTTGTCTTTAAAAGGTCCAACTCGCTCTTCCAGGCCTGGGCTTGAAAGCTGCTTCCCCAGGGTCAGGCTGGAAGTCACGGCCACCCTTTCTGACCAGGTGGTAGAACTGGCAGGCCGGCCTGACCAGCACTTGGCAGCCCAGGCCTGGCCAGCCCCGTGGCCTCTGCTGCCTCGGGCTTGTTCCCCGAGCCCAGAGCCCAGCTCGGCCCCCAGTCTCGCACGAGATTCGGGCCTGCTGAGACGTCCTCCTCAGCTCAGGAGGGAGCTCCCCTCCCCGGGGCAGCCCCCGACTCAGGCTCTGCACAAGCCAACCCAGGACATGACGAAGGTGCTGAGTCCTCCCCAGAGAGAGGCAGGCCTAGGGGTCTGGGAACCCACAGCCCCCTTCCCCTGCAGCCCCAGGTCCCAAAGGGTGGGTCATAGTGATGACACCCATGGCTCCCCAGTGATGGCAGAGAGGAGGGTCCCTTGTGAACACGAGTTCCCCAAGGGATGTGGCCGAGGAGGGCTGAGGAATGCAGAGGTCGTGGAGGCGCTGTGTCCCTTTAGGCACTGTGCTCCTCCAGGGACAGGCCCACGAGGACAGGTGAGGTTGGGGGGCTGTGTGGACAGGCCCCCTCATTTCAGGCCCCTCCTGGGTTGGACTGTGGGTGCCTGGCTGCCCCCCTCTCCAGTCTCACCCTGACCTCGGGAAAGGACTCTGCCCATCAGTTCTGTCTTGCACCCCCATGCGCTGGCGGATGCTTCATCCTTAGGGAAAGGTGTTCCTAGTCCCATTTTATGGATGAGCCCTCAGAGAAGCAGCTTGAAACTCATGTCTCCGGGGGTTGGGGCGGGGAGGAGGCAACTGGCAGGTCCCAGAACTAGGACGCGGCAGACCTGGGCTGCAGAGCCCAAGGATGACTTCAAGGTGGGTCTTTTCCTCTGTCTCACCAGCATCGGGGCTGGGGGCAGCACCGTGGCTGCTTTGGAGCTGGAGACCAGGCTCAGGGGAAGTCCTAAGTTCCAAGAGGGACAGCCCAGCTCCACCCACTGCCTCGCGTTCCCATCTCCCTGTAACCAGCAGCCCGTCTCTGTGATGGGGCAGCCAAGGAGGCCTTTGCCATTGAGTTGTGAGTTTTGAGCGTGCTTGGCAGCGCTGGGAGCGGAGGGCCAGAGGCAGGCACTGTTGTGAGCATGCTGGGGCTGAGGCCAGGGACCCCCTCCCAGACTGGCGGGGGCCTGCGCGCCAGGCAAGGCTGGGTCCTCGTCCTGGGGGCAGGTGCCCTTATCACACCTGCTGGACAGTGAAGAGAGCGAGGCCCAGGATAATCCTGTGTGTTAGAACTGGCTTTGGCGGTAGAATCAGGAAACCAGGTAACAGCACCTTAACGCAGAGAGTTTCCTTTCTCACACGTTCAGGTGACCAGGACGGGCAGCCTGGGACCACAGCTAGGCTGCAGGGCTGGGGGCAGGAGAGTGAGGTGCTGGGTCGGTGGAACCCCCACCCACTTGGAACGTTGAGGATGGGCATCGCTGCAGCCAGGGCCTGGGGCCCTGGTCTTGGGGTGGGCCGGTGGGGGCAGTCCTCCCCCTGGGTGGACTCCTGCAGGCCCGGGAGCAGAGTTCCTGAGATCTGGACACTGCTCACGGCCCCACCTCCTTCCACCCCACTTCTGAGCCCCCGTTAGCACCTCTGGGCACCTGCAGAGGCCAGCACCCCCAGCTCCTGCCCACCCAGTGTTCCGGCTCATCTGACGCTTGGGAAAGGCCGCTGCCTACCAGGCGGCCTTGCTGGGGCCTCCTGTCCCCTGAGCAGACTGATGGCTCTGTGTGCCTGCCCTCCTGGCACGGCCTTCCAGAGTGAGTGCCACCAACCACCCCCCTCCACCCTCGCCACGTTATAAGGCAAAGCCCACGGGGTCTGGCTGAGGACTTGGCACGGCTTGGCTGAATTAGCTACTGGGTCTTCCTAGAGCTGTCTAGCCTGTGTCGGGGCTGAGCGCAAAGGTCAGCAGGTAGCTGAGACCTGACCTTGAACCACCTTCCAGTGGCCAGGAGCAGGTACCGGCTGGGGGAGGGGCTTCTTCCATCTCCTTTGGAATCTTTTCCTCCTGTGTTGTCGCCAACACAGCCGCTGTCTGTGGAGGCGGTCGCCAACACACCGGCCTGGCAGGTGTCTCAGGCGTCCAGCCTCATCTAGCTCGACCCCTCCACGACCTTCCAGTCTCACAAGTGGAAACAAGAAAGCGTAGTTAGGTCAAGTCCGTTGCCCAAGGTCACAGCTGTGAGAGGAGCGTCAGGGCCTGTCTGACCCAGAGCTGGGGCGGGGTCCGGGTGTCCACAGATGAGCACGGCTGGTCCACGGAGGCTGGCTGCCAGGGCTTCGGCCCCAGGCCCCTGAGAATCCTCACGTTTATGGCACTCCCTTCGAGGCCAGCGGCCCCGATCAGGGTTAAATGGAGGGCTCCTGAGAAAGACCCACGAGGGGTGAGGATGGCGCCTCTGTTTAAGATCACTGCCCCCCTGGGCCCTTGGAAAGTGGGGCGGGCCCCCTTGCCTTGCGGGGACTCTGGCACCAGTCACCCACCTGGCAGCTGCCTGCAGTGCTTCTGAAGGTTGGGCCACCTGGCTTCAGGCAGCCTTGGCTCCGCCTCCCTGGGAAGGCAGGACTGGAGCTGGGGTGCGAACATCCCTGGCACACCTGTGACTCCCGCCCTGAAGCTGGGGCCCTGCTTCCTGTGGGTAGGGGCACTGGAGTCAGCTGGGCTCCGAAGAGGCCTGGGCTGGGCAGGCCTGGCTGCCTGGGGACAGCGGCTGCCCGGAGCTTCCTGCTGGGAGAGAAGGGCAGAGCCCCTCCTGCTGGGGGTGGTGTGGGGGCCAGAGAGCCCCTTCAGGGGGTGAGGGGAGGCCTGCAGAGGAGCTAGAACACCTCACCTGACAACCCTGGAGTTTAGGGGCGGGCTCCAGCCCATCCCGGCTTCCCCGCTGTGTGACTCTGGGCAAGTCGCTCAGCTTTGCTGAGCCTCCACTTCCCTGGTGCAGGAGTATGTGACCTTGTGGGGTTACTGTCTGAGCGAAACTGGACAGTTGGCGTCTGTCCCCAAGCAGGCTTGGCAGGTAGCATGGAGCACCTGCTCCCGGGCGTGGGTGTGGGGCATCTGTCCCTGTGGTTATGTGCGTGCTGCATTCCAGGCCAGGACAGACCAGCTCTCCCTGCCCAGGGCCCTGGAGCCTCTGCACAGCTTGGGCGGCTTCCCTGCTCTTGGAGGAAGCACTGTGAAGATGATACGACGTCCCCACCACTTTGACTGAAAACCTTGACAAGGGGGGACAGAAGGAGAAGGAAGAGCGAGACCCCGTGCCCGCCCCCCTGCAGGGAGTGACTGATGGACCCTCCCTGTGAGGAGCATCTCTTGCTTCTGTCTGCTCCCGGGATGCCCCTTTCTTTTGCAGCTTCCTGTACTTATGTCAGTGGCGGTGTCTTTTGGTTTTGAGTGCAGTTATTTGTAAAATGTAGCGAGTTGCTCCCTGGACCTGTCGGTCCCTCCTGGAACCGTTTGGTCCTTGGGAGGTCTGCCTCAACTGGGGTGGGAGAGGCCCCTGCTAGGCTGAGTATCACAGGATACTGTGATCACGGTATATACAGTATCTTTCATCATCCCCCACCCCCAAATACTGATCCTGTCAATTAGATACAAAAAGAAAATACAGAGAAGTTCTGGAGACGGACGTTTGGGACAGCTGCATTATACACTTGTAAATGGTTTAAAATGATAGATTTTATGTTATGTATATTTCACAACAGTTTGTCTCCTTTTGGCTGAGTCAGGCAGCATGGAGGATCTTAGTTCCCCAATAAGGGAATAAAGCAGGGATCAAACCCGGGTCTCCCTGCATTGGAAGGGCAGACTCTTAACCACTGGACCACCAGGGAGGTCCTTCATCACAACTGTTTGAGAAGAAAAACGGAGCCAGCAGACACCCCCAGAGAGTGACCCACTGTCCTCTCCAGATGTGGTCTGGGACTTTGCCTGTGAGCTTGGCAGGGAAATGCAAATGACAGGTTTGCATTAGAAGTCCCGGGAACCGACCTGACAGCGAATAAGTAGGGATCTTTGCTCTTTCTCTGCCGCAGCCCTGTCTATCTGGGCAGTCCCCACGGGGACGCTGAGGTGTTCTTTCCCTAATCCCGACCGCGCCTGTGCGTCGGAAGCTTTAGGATCAATTGCCAGAAGAGGATTGCAAATCTCAGGGACTAGGCTTCTTAAGGGCTCTTCTAGGTCCTGCCAACCTGCCCTCCTCCAGAAACCTCTGCGATCTCCCACCTCTGCCAGCAGCCTCAGGCCGTTTCCCGACACCGGCCGACACCTCCTGTTATCCGGCTATCCTCTGCCAATCCGAAGGAAGAGGACAGGGCTTCTCGTTTCAATCCGCGTTTCCTTTGATGGCTAGTGAGACTGCGTGCCTCTGTGTTGTTGGACGATGCACGTTTTTCCTGTTGGTGAATGGCCTGCTTGCGCCCCCTCCTTGGGTCGGTCAATCCTCACAACGACCCGAGAAGCCATCTCTTGGCAGTCGAGAAGCCCGAGGCTCCCCAGCTGAGGTAGCCAGGCGAGGTCTCCCAAGAGTGTCCGGCCAGGGGCACCTCTGAGCCGGATGGGAACAAAGGGACAGGTCTGGCTCGAGCTGGCAGAGGCTTAGTGCTAAGGAGGATGGCCCGGCTTCCAGATCCAGCAAGGCCGGCTGGCCCGACTGTGAGAGCAGCCGGGGCTCAGCTGCCTCCCTCGCGGAGCCCCTCTCTCCAACCTGTGCCGTGGGAGGAGGAGGGGAGAGAGGCTGTGTGGGCCAGATGCGAGCCTGCCTTTGGGACAGAGAGGCAGAGCCGATAGGATCTACTCGTGTGAGGCTCAGAGGAGTCTTATCCACAGAGACAGAAAGATGCTGGGGCCCGGGGCAGGGTGTGTGTGTGTAATGGGAACAGCGTGTCCGTCAACTTGAGAAGATAAGAGTCTTGGGGACAGACGGTGGGGGCAGTTGCTCAACAACGTGACCGCACTTGAACTGTGTATTTGAAACCAGTTCAGAGGGTAAATGTGCTGCATGCATCTTACCCACAGTTTTAAAGACACGAGTCTGCCTTCGGGCCAAGGACCCACTCTGAGCCTCTGCTCTATTGAGAACCAGGTCTGGGCCCAGGCCCTTCTGCCTGGAGTGGAAAAGGCCTCCCTCCCGGTCAGGACTGTGAGGAGCTCCCTGGCGGCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGCACGAATCTTGTGCGGAAAGTGGAAAGCTCTTGGGTCACCGGGAGCTCACCTTCAGCCCCGCCCCCACCCACGGGTGGGAAGGACCCAGGGGGCCTGCAGGAGTGGCAGAGGAGTGACCTCAAGCCGTGGGCTCCATCGCCCCGTGTGCACGGACCCCTGACTGGCACCTGTCCTGTGCCAAGTGTGTGCGGTGTCAACCTTCTCCCTGCCAGCCAGCTACCCAAAGACAGGGGCACGCATGGTCTCCCTCACCCGTCACCTCCTGCGGGGATAGGCCCCTCCAGGTCACGAGTGCCCAGGGCAGCCTCCTGCCAGGAGCAGGGCCCACGCACATCCTAGCTCCACTGGCATCCTGGTGTGACCTTGAGTATGTGTGTCTGTGTGTGAAACGGGCAGGCTGCCGCTTTGTAGGACAAGGAGGCGTGAAAGCCATGGTGCCTGCCGGGCCGGTCTCCCCAGCAGCAGCTCTTCCAAACCAGGAAGCAGCCCGCAGCTCCTCGCCAAGGTTTCCGCTTGGTACCCACGCTTCCCTCCCTTGGGTGTGGCTCTGCCTTGAGGGATGGTCACTTCCTGTGGGGGGCCCCCTGCCCCGGCCTCCTCTGTGGGCGGCCTCTCCACGTTGGGTCCTTCGGTCTCTGATGCGGCTGACAGCAGAGTTCACCCAGCCTAGGGGTTTCTCAGCCTCCATCCCCGCCGTTCAGCTGGGCCCCCGGCCTGGGGTGACAGGCAGGACTCGGGGGCTGGAGGCTGGATGACAGGTGCAGATCTGGGTACCTGGACGTGGAAGGGGGCGTCCTTCCCACAGCCAGGCGTCAGGGTCCCCGAGGCCTTGCTTCCGTGTGACCTTCATGTCACCGGCTGGGGAGGCGAGGGGCGGGGGGCACTCGCCATCCTGCTTGGGGACAAGACCTGAAGGCGCTCGGAGGGGAAGGCGGGCTCAGGGTCAGTGGCCAGCCTGCCAGGGTGGGCTGGGGGTCTCCGGGCTGTGCGCGCAGAGCCCACGTCACGCCGGGGCAGTGGCCCTCTGCTCACTGGGCCCGTCTCCCCCGCAG
Seq C2 exon
GATCATCAGTTGGTTCGTCCGGTCCTTCAAGTACGCATATGGCCTCCGCTTTGAGGTCAAAGGCCGTGAGACGCTGGACGAGGACCGGCCCTGCGTCATCATCTCCAACCACCAGAGCATCCTGGACATGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025161:ENSBTAT00000035230:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0155316=Acyltransferase=PU(22.5=63.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development