RnoINT0015240 @ rn6
Intron Retention
Gene
ENSRNOG00000019466 | Agpat2
Description
1-acylglycerol-3-phosphate O-acyltransferase 2 [Source:RGD Symbol;Acc:1309229]
Coordinates
chr3:4048344-4055327:-
Coord C1 exon
chr3:4055203-4055327
Coord A exon
chr3:4048478-4055202
Coord C2 exon
chr3:4048344-4048477
Length
6725 bp
Sequences
Splice sites
5' ss Seq
GAGGCAAGG
5' ss Score
2.53
3' ss Seq
ATTGATATCTCTGCCCTCAGCAT
3' ss Score
5.98
Exon sequences
Seq C1 exon
CTGAACCGCACAGCCAGGTTCTACGTCAAGGTCGGTCTCTACTGCGTGCTCTGCCTGTCCTTCTCCGCCGCGGCCTCGATCGTCTGCCTGCTGCGCCACGGCGGCCGCACCGTGGATAACATGAG
Seq A exon
GCAAGGGGGCCGGACGCCGGGATGGGCGCGCGCTTCCGCTTTCCTAACTTCTGAGCTCCTCGCGTTCTTTCCTTCCTGCCCCGCCCGCCCCGCTGTCCCCACGGTCCGGAGCCTCGGACGACGCGGCTTCCCGTCCCGGGTCCCTAGAAGCGCGCGTCACAATGTGCACGGCAGTAGGGCTCGGACCTCCGGCGCCCCCTGCGCGCAGTGGAGTGTCCGGTTTGCGCGCGCCGCTAGCTTTAGGAGAGGGAGGGGGCCGGACGAAGGTGAGACAGGCCGGATCCCGCTTTCACCAACAGGGAAACCGAGGCCTAGCCAGGCTTCCGGTTCGTGCTCCCACCTCTCCGCCGGTTAGAAGACACCTGTGCCCAGGTGTAGCCACAGGTTCTCCTGGTCCTTAACTTCCTCTTCTGGGGGTGGGAGTTGAGCTGTCTTTGGGACTAGCTTACTAGCAAAGAAGGAAGGAGGCTCTGGCCAGGATCCTCCTCTGTCCATCTCCCAAAGCAAGGAAGTTTAGTGGACAAGCAGAAGGTAGGGGGATCAGGCTAGGTTGTTCTGCAATGGGGGCTGCCCGAGAAAAAGGCCTCCTGTCCTTTCTCCCTGTCCACACTCCCAGGAGACTGCTGGAGACTGTTGCTACATTTCTCTCTGCCCCGTTTGGACTGTTGAGCTGGTGGGTTTTGCAATGTCCTGGCCTTGACCTTGGCTGGGTGTTTCGGACCTTGTGGCCCCTGAAGCCCCACCTCCCCTGCAGTAGTTACAGGGACTGACCGTGAATGATGGTTTCCTGACTCTTTGCTGTATCTGTCGTCTTTGGATTTAGGGTGCTGTCCTGACCAGCCATATTTTGTAGATCATTCCTCATTTCTTAGGTGCTTATAGTGACCTGTCCCCTCCATCCACTGTCCCTGGGAGCAGACTCCAGGAACAGGCAGGCAGGGGAGAGCCCTGCACAGAAGACAGGGGTACCCTAGCTATGTACTTTTCAGGATGCACAGGACAGGGTGGGGAGACCTGCTCCCCACCTTCCCACCATGGCTGTCTTAGGGTCCCTGTCTTAAATCCTCATAAGGCGATGAGTTGAGATAGGAACAGCAGGGCCCTTGGAGCATTGTGAGCACGACATCCCCCAGGGGTGACCGTAGAGGGGGATGAGTGGGAGAGAAAGGGATGGGGGTGTCTTAAGAGATGGAGGCTTGCTCAGTCCACACAGGGACCCATCCCCATCTCGTGCCTCCCTGGGCTAAGCCAGCCTAGTTTGGGTTGCAGATGCTACTCTGCCTGGCAACAGATGGTACAGAAAAGGTTCAGAAAAGCAATTTGAGGAAGCCTTGGGGGCCGAGCGAATTTGGGGGAAAGAAGGAGGTGAAAGCCCAAGCTTGCCCAGCCAGAACCCCAGGAGGCAATTCTGTAATGAATTCTATTGTCATCCTGCAGTGCTGCTCAGATGTGATGCTGCCCATGGGTGCCGCATACAGACACTTCTAAGGCACAGCTTCTCGAGACCTAATACAGTGTGGCCCTTTAATACAGTTCCTCATGTTGTGATCACCACCACCACCACCATAAAATTATCGATATGTCATAACTGTAATGTTTTGAATCATAAATGTCTGATATGCAAGTTATCTGAAATTCTACCCCTGAGAAAGGGTCATTTGACCCCTAAAGGTTGAGAACTGCTGCACTAAGGGCTGTGGTTATAACCTTATTGTTTTGTTTTGTTGTTTATTTTTCTAGACAGGGTTTAGGGAAAACCCTGTGTAGTCCTGGCTGTCCTGGAATTCACTCTGTAGACCAGGCTGGCCTCAAATTCAGAGATCCACCTGCCTCTACCTCTCAAGTGCTGTTATTAATTTGAGGGCACTATACATCCGTAAGCCAGATCCCGGGCTCTTGGAAGGGCAACCCTGGGCTGCACCTGGTTTCATTTGATTTAGAGTTCTGAGATAACAAGGAACAGCATTAGGAACACAGAGACAATTCAGACATGGCTTAAGGGCTAAAACTAAGGAAGGGCTATGCATGCGGAACCCTTCCCTGTGTGCAGACCAGTCTTGGGTGGCAGGAGGCAGAGGCCTTGGTTATACCATGTGACAAGGGGTAAAGCCCAGGGAGGCTGTATAGAATTTTGCTCAGCTGCAAAGTTGGGTCACCTTAACAAGAGCAATTTAGCCATCACACACACACACACACACACACACACACACACACAGAGAGACAGAGAGAGACAGAGAGAGACAGAGAGAGACAGAGAGAGAGACTGAGATCATGAGACCATGACCTCAGTAAAACAAGAAGAGGCTTCTCTTCCCAACTCCAAGTTCTAGTGGTGCATCTTGTAACTACACTGTATCTTTTCCAAGCATCTGTGGAGGGTGAGTGTTGGGTGGGGGACAATGGATACCTCGCACCTGCAGGAACTAGTCTTAGTTTTTAGGCTGAACTTTAGCTTTGAGCCCTGACCAAGCCCCTAACAGCCACAGCAAGGCTGGCCCCTTCCCTGCTGCCTAGGTCTGGCATAAGCCATAAGAGTCAGCATCTTGCTGGCAAGTGCTGGCCATTTGCAGGTTAGCAGAAACAGAATTATATACAGCATTACTAACGTGAACCTGATTCAGTGGTGGCAGTCTTGACCTTTTGACAACAATGAAACCTATCTCTGCTCCCTTTGGGTAATGAGTCAGCCCCCATCCCTCCATCCTCCTCCCCCTCCCCCTCCCTCCCTCCCCCTGGCACTGACTACCTTCATTCTCTTGGGTGTTTGCTGAGACTAGAAGCCCTATCCTAGCCCCAACCTCCTGCCCCTATCTTGTTCTTCACTCCTGAACCACTTGTCAGAAAACTGCCCTGCCAAGTGGCCCCAGTAGGATCTCCCATCCTCTAGGCTAGACCCATCAGTGGCTCCCCTACCTGCCATTCTCCAGCAAGGTAGCCCTAGTTGGCCCATGAAGTTCCCATTTTTATCTAGCAAGTCTCCACCCATCAAACTCAAGCCCAGACGTCAGGGCAGTGACCTTCCACAAGGACTACTGAGCCTGTGGTATAGGCCCTGATCTTGAACTGCTTCTCAGCTGCCTGGGGCAGGCATGGGAGGGGCCCCAGCAGGTTAGAGGGCCCCTTTCCTGGAGTTATTCTTGTTCTAGCTCTGCCCGTGTCCCAATCAATAGGCTACAGGTCCGCAGAGTGGTGTTACTACATCGGCCAGCCCCGTGCAAGGTGATTCTTGGCATCCTTCCCCTTGCACAAGGTGACAGAAACATGGAGGCCAGGTCATAGATGGAATGCATTGATCCAGACTGAATTACAGGCTGTCCGATCAAAGCAGCTCAGGAGTCCTCCAGAGCAACCAGGCTGGGCACTCATTATCCCCAGTCTCTTAGCTTCTGATGGTTTTGACTCAGCCCCTACTGAGGAACACTAGAGGTGCAGCCAGGCCCAGCTGGGAGTGAGGACCAGAGGATGTGGCATCTCGTCTTAGGTGCAGAGCTTGGGAGGACCTAGATCCTTTAGGGGAGAGGATAAGGTGGCCAGGACTAGACTGGGTTGGCAGCTCATACTAGGAATGACACATCCCTTCAGGGGAGTCACTTGCTGGGTGGGGCGAGGGTGCCAAACCAACAAAGCAGGCAGACAAGACAGAGGATGGACTGCTGGAACCCAACAGACATTGTTGACAGCATAGGAAACCCCGGTCCTGCCCCAGGGCGCCCTCTGACCATACACCTCGCCTCGGCTAGAAACAGTGTTAGGAGGTGGACTTGGGTCCACTTGGCTTCCTCAGTCCTGGGACAGGTCACTAACCTTGCTGACCTGAATTTGTGCAGCCTTTGAAGAGTGGGTATAAGGACTATCTAGCCCCTGTGTGTAAGCAGAATTCAATGAAAGGCCTGAAGTCCTCGGCATGGTACCTGATGGTGTCTTTCCCATCAAACAGAGAGGATAGAATGGGGAGGATTCCTACTTAGACTTCTGCTGTCTGTCAGCTACATAACCTCTGTAGAGCTTAGCTGACACCTTCCTCTGGGAAAAACTTGTTTATTGATCAATTGAGGGATGGAATCCAGGGCCTTATGCCGTCTGATCCAGTTTTCTACCACTGAGCCACCCTCCCAGCCCATAATGTTGTCTGTTTTGTCTCACACATTGTTGTAGCTCAATATTGTATGAAGCCCTGGGTCCCATCACCCTAATCCACCCCCAGAACTGGAAAGACAGACAGACAGAGGACATATATATACACACATGCCACTACTAGCAGTGGGCACAGTCTGGATGTAGCTGGAAACTCTTCCCTTTGCAGCAAGACATGGGAATATGAGTTCGTAGCGACAACTACAGGTTGACTGACCTCTTTTTTTTTTTTTTTTTTTTGGTTCTTTTTTCGGGGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGTAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCCGTTGACTGACCTCCTTATCCAAGATACTCACGGGGAAGATAGCTCAGCTGGTAGATTACTTGCCTATCATACTTGAAGTCACCATTGCATAAAGCCAAGGTCTAGTGTGCATTCCTGTAAGCCCAGAATTAGCACTGTAGAGGCAAGAGGGGCAGGAGTTCAAGGTCATCCTTCCCTACTTAGTAAAACTAGGCTATGCCAGACCCTAATTTTTAAAAGTGGGTTGGGGGATGGGCGTGGAGAAAGCATGGAAATGAAATTGTTTAGATTTTGGATGATCTGAGGTTTAGAAGACGATTTACACACATTGCTAATGAGGTTTCTTGGACTTGACCTCTTTTTTTTTTTTTTAAAGATTGATTTATTTATTATATGTGAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCTCTTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCCCTGGAAGAGCAGCCAGCGCTCTTAACCGCTGAGCCCTCTCTCCCGCCCCTCTTTTTCTTTTTAATGTGTCGAATGTGCCATGTGCATACACCCAGAAGTAACTCCTCGGAGCATCATCTGTAGTTTGGCCGCCTTTGGCTGTGGCCCTTCACGTGAGTTCAGACGTGGAGCTTCCTCATGAGCTGGTGGGTTTTGCAATGTCACCATGTGACACCATGTCTGGGAAGTCTGGGGTCTCGGAGCGCTTCAGATCCAGCCTCAAAGGGACAGCTCAGCTTCCACCCTGACTGGTGGGTGTGGCTACCAGAGACTTTGAGCTCCACCCTCAACATGCACACAGCCTCCAATAAGAGATGTGTTCTTTGCAGTGAGTCAATCATGATCCCAGTGCATTTCCTCTGCCCCGTGCTGCAGGTGTTTCCAAATTCTCAGATTGGAATCTTGATGATCCATATCTCTGTGGTGCTGCCTTAGAGAGGATTCCTGGGAATCTGGCTAGCCACCAACCTCTGCCCTCCAGACACATCTGGCTCTAACCCAGAGAGGGAGCAAGGGACTGTGTTCCAGCCCTGTTAAGTCTTTCTAGTGTGCGTCTGCCAGGATCCTTCCTACCTCTGCCTCTGCCTTTTCACAGCTGGTGAGACTGGACAGTTCTCTGTGTTGACACATTGTCTTCTTTATCTTCCCTGTCCCTTTGCACCTCCCACCCCCTCAGGGATTCCAGCAACTGTGACTTAAAGATGAGAAGCTAGGCTGGAGAGATGGCTCAGCGGTTAAGAGCACTGACTGCTCTTCCTGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATCTGGTGCCCTCTTCTGGTGTGTCTGAAGACAGTGACACTGTACTCACACAGAATAAATCTTTAAAAAAAAAAAAAAGGAGGAACTGGGGGCGGGGGAGCAGTGGCCACCCTCTAGGGGCTGGGGTCTGCCCACCTGCCTTTGCAGTAATGAGCATGTCTGACCCCAAGACAAGATGGCTGGAACTAGCGGAGGCTGACGGGCCTGAGGAGAGGTGCCAGGTTTCAGCCCCAGGGAAGCAATGACTAGTGTCATCATCCGGATTAGCATTTTTCTCTCTCCAAGATTCAGTTTCTTCGGCAGGGAGGGTTGCTCTTCCACTGCTGGGTTCTCGATGGGGCAAGCCTTGCAGGAAGCAAGTATGGGGACACAGAGCAGCGAGAGTTTCCTGGGGCTGGGACAGGTGGGGTCAGGGGTTATCAGGACATCATATTAGTTTGGAGAGAGAAAGTTCTGTGGACAGACAGTGGCGGCCGCCGTCTAACCCTGGAGCCTTCACATACTGAGTACATGAAAGTGGTTGAAATGGATGCTTTTTAATGGCATGTGGATTTTAAAGTAGCTGAGAAGAACCAGTGTGAACCTGCTGCATTGTCTGAAGATAGCTATAACCCGGAGGGACCCTTTCTCGCAGGACTGCGGGGCCCCATGGCATGTAGAATGGAATGTGTCAGGGTCCACTTCCCTTGCTCTGTCACAGTCAAAGCAGGAGATAGGCCACCTCTGCCCTATACACAATGCCTATGACAGTCTCTCTTCAGTGACTGGGGCTGAGTAGAGAACAGGTCAGGTACCCTTGTGAGTAGGGAGCAGGGCTAATTTATCCTAGGACTCTGCCTGCCCAACGTCCTTCCTGTCCTGTGCTTCTCCCCAGCTTGCCCTCCCTTCGCTATAAAAGCTCATTTTGGTTATTGATATCTCTGCCCTCAG
Seq C2 exon
CATCATCAGCTGGTTTGTTCGGTCCTTCAAGTACGTGTATGGCCTTCGCTTTGAGGTCAGCGGACAGAAGAAACTGGAGGTGGACGGTCCCTGTGTCATCATTTCTAATCACCAGAGCATCCTAGACATGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019466:ENSRNOT00000026408:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0155316=Acyltransferase=PU(22.5=63.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]