GgaINT0124118 @ galGal3
Intron Retention
Gene
ENSGALG00000023517 | AGPAT2
Description
NA
Coordinates
chr17:8418350-8420488:+
Coord C1 exon
chr17:8418350-8418537
Coord A exon
chr17:8418538-8420474
Coord C2 exon
chr17:8420475-8420488
Length
1937 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
TGGATGTTGCTTTGGTGCAGGCT
3' ss Score
6.11
Exon sequences
Seq C1 exon
ATGGAGCCGGGTTGGCTGCTGTGGGGCGCGGCGGTGCTGCTGCTGCTGCACCTCCTGATGGAGCTCAGCTCCGCTGTGAACTTCGTGGTGCGCATCGGTTTTTACTACGTGTTGTGCATCGTCTGCTCCGGGCTCACCGCTCCCGTCTGCCTCCTCGTCAACGGCGGCCGCACCGTCAAGAACATGAG
Seq A exon
GTGGGTGGGGGCGGAGGGGGGCGTTGGGGTCCCCGCAGTGGGGGTGGCACGGAGCTGTAGGTGGGGAGGGGGGGTCTGGGGGATGCTATGGGAGGCTTTGTTTGCTGCGTGAAGTGGGAACTCTTTCCGCCTGGGAGGTGGGCTGGGGGCGTCCTTAGCTTAGGCTGGGGGCTCCTCCCTGCCGTCCATCAATCGGAGATGGAACCTCAGTGGGGCTGTGGGATGCTGGGGCCCGAACCACGAAGGCCACGCAGCAGCCACGGCTGTGCCCGGAGGGCTCCCAGGAGGCACATCGTGTCCTTTCAGAGGGATGTGGGGCGGCCCCACGTGTGCTGATGGGCGCTGGGTTCCACCACCATGTGAGCCCTCCTGGGTTCCACCACGTGTGTGGGGCGCTGAGGGCAGGGTTAGCACTGCTGTGGGTGGCACAGAGGAATCGGGGCTGGTGTTGGCTTCCGGGCCCCGCTGTCAGCTTTCCTTTGGTGCTCTGTCTCCCTGCTCCAAGCTGTGTGTGTAGGGAGGCTCCTTTGGGGTGGAGCGGAGCCCTCTGCCTTCATGCATCCTCGTGGATGGGAGGTGGGGCAGATCCGGACTTTGGCAGCCGTGGGGTTGTGGTGCGCTGAGCTCAGAGCAGGGCCCGGGGAGGAGCAAGCAGTGCTGGTAGGAAGTGCCCTGTGCTGTGCATTGGGTGCTGCTGGGAGCTGCTCTGCCCTGCGGTCCGTGCTGAGCTCCCAGGGGCTCCTCCCAGAAGCTGACAGCAGCCCTGTAACCGGGAGCGTATGATGTCAGCTCTCTGCTCATCCCTGCAACTTCTGACATCTGTAAACTTAGCAAGGAACTTCTTCGGGAAGAAGAGCTCCCTGTGCTGAATGATCCTCCTGTTGAAGCTCAGAGCTGAGCTGTAGCCAGAACCACCCTTTTCCTGTAGCCCAAGCCCATGGTTTCCATTCGCTGGCTCCAGCTGCTGCTGCAGCTCCCAAATTCTGCGAGGTCTGTGGGTCCTTATTGCTACAGCATCCCTGCGGGGCCGTTTGTCCCGGTGCTGCTGCTGGGGGTGGGCAGTGATACCGGGCCGTGTCCGTGCTGGAGCAGGACGCCCTGTCCTTGCCGTGCGGGACCATGGGAGGGATGCCCTCCTCCCGTAGATAGATGTGTTTATCTAGTGGTGAAACCTCTTGTGAGGGCTTCCAGCCTGGTGAGCACCCTGCGTGAATGCTTCACGGTCAGAGGGTCCTAAAAAAGCCCTCCGCAGAGCTGCTTGGGGACACGTTGCCTCTCGTTTGTCCCCTCGCTCCCTGTGTCTGGCAGTCAGGACATCAGATTTACAGCTGTGGCTGCACCACGCCGGGATCATCTTCCCCACAGGGAGCTGCTGGGGGGGCCGGAGCTGCTCAGCCCCACGGTGACGTGGCTGCTCGGGGCCGCCCATCGCCCGGTTCCTCCTGGCTGCTGCCAGCTCTGCCCCTTCGCCTCTTTCAGCAGCTCAGGCCACGTCTTGTGCAAGGAAATGCTCGCCCTTCGCTGACAAGAGGAAGTTGGATGGTTTGCTCTTGAGTAATGAGTAACCAGCCTCTCCCAGCCCGCTTCTGAACAGTGTGACTGCTGGAGCAACGACCTTGTTTTTGGTTGGCAGGCAGGAGGGAGGAGAAGTGGGATGTAGGTCAGTCTGGTGGTGCAGCCTCTGCCGTGCCCCCCCCGGTCAGTGTCACCCTGGCTCTCCTCACCTGCCCTGCCCCGGCTGTGCTGCCCCTGCCCCGTGTGGGGCTCTGGGTGCGGTCTGACCTTTGCAGCAGGTTTGCATGCTGGGGATTGATAGCAGTTGTGTCATGCAGTGGTGTAACCTGCGGGCACTGCCCTGCCCTGAACTCCGGTGTTAGAGCCAGAAAGCCCCGAGGGTGTGTGCATGGGGTGCAGAGGTGGATGTTGCTTTGGTGCAG
Seq C2 exon
GCTTGTGGCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023517:ENSGALT00000039021:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]