HsaINT1003190 @ hg38
Intron Retention
Gene
ENSG00000169692 | AGPAT2
Description
1-acylglycerol-3-phosphate O-acyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:325]
Coordinates
chr9:136677423-136687423:-
Coord C1 exon
chr9:136687176-136687423
Coord A exon
chr9:136677557-136687175
Coord C2 exon
chr9:136677423-136677556
Length
9619 bp
Sequences
Splice sites
5' ss Seq
GAGGCAAGG
5' ss Score
2.53
3' ss Seq
CATGGTGGCCTCCCCTGCAGCAT
3' ss Score
7.82
Exon sequences
Seq C1 exon
CGCGGGGGAGAAGCGGGAGCGGGAGCGGGAGCGAGCTGGCGGCGCCGTCGGGCGCCGGGCCGGGCCATGGAGCTGTGGCCGTGTCTGGCCGCGGCGCTGCTGTTGCTGCTGCTGCTGGTGCAGCTGAGCCGCGCGGCCGAGTTCTACGCCAAGGTCGCCCTGTACTGCGCGCTGTGCTTCACGGTGTCCGCCGTGGCCTCGCTCGTCTGCCTGCTGCGCCACGGCGGCCGGACGGTGGAGAACATGAG
Seq A exon
GCAAGGCCGGGGGCCGCCGGGAGGGGCCGGGGAACCGCCGCGCCGCTTCCGCTTCCCTAACTTTCTTCTGGGCTTCCCTCCTTCCTGCCCCGCCCGTCCCGCCCCGCTCCGGGGCTCCGGGGAGAGCGCGCCTGGGCCGGCGGCAGGCACAGGAGGGGGTCCCGGAGTCAGGGGGTCCCGGAGTCACGGGGTCAAGGAGCCGGCGTCACAGTGCCCAGCACCCCACCCCCCGCCCTGGCCCCGGGCGTCTACACCGGTTTCGGCCTCCGCCGCGTCCCTGCAGCCCGGCGTGGGGTTCCGGGGGTGGAGCAGCTTTCGGAGAGAAAGGGGGCCGGTCCGCGCTGGGAGAGGCTCAGCCCTGCTTCCTGAGCGGGGAAACCGAGGCCGGGGCGGCGGGGACTTGCCCCAGGGCTATTGATCAGGGCGCACGACGGCGTGGGGGCACCCCTCGGCCTCCCTCCGACCCCCTCCTGACTGTCCGCCCGGTGATGGGCGCACCTGTGGGGCGGGTTCCCCTTTCTCTCCCTTTCCTCTTCGCAGGGAGGTGGGGGACCCGGAGGGGACCTGCTTCCGTGCTGGGGAGCGCGCCCCTGGCCTACAGCTCCGGGGGCCCAGCTTCCAAGCGAAGGGAAGGAAGAGTTAGGACTAGGGTTCGGCGGGGCTGAAATTTTCCCCTGGACGCCTTCCAGAAGGTGGGAGCTTGGTTTTGCCAGGCTGGGGTTGGGGGCCAGAGGTCAGACTGGGCTGCCAAAGACGGCGGGGGCTGCCTGCTCCTGGGCGGGGTGGCTGCTGGAGAAGGCTCTTGCCTGCCCCCTCTCCCTGTTAGCCGTCCCCAGGCTGTTGCTACATTTCTCCCTGCCCTGTTTGGACTGCCCAGCCAGTGGCTTTTGCAATGGCCTGGGGTGGGGGCATTGTGGCCCCAGAGGCCCCCTTCCCCGTGGTTCCAGGGGCAGTGGGTGAGGGTTTGCTAGCTCCCTGCACTCGCTGTCCTTGCCAGCCCTGGGAGGGCACTGAGGCTGCTGGAACGGGCCTACAGTCATGGCTTCCAACGGAGCCCCAGAAGCTCCAGGAATATGAAGGAGGACCCTGGGCCTGATGGTGAGCATGGAGAGTCCGAGAAGGGCCTGCTGGCTGCTCAGCCAGACGTGTGTGACCAGTGGTGATGTGGGCCAGGTGGCCCAGGCCGGGGTCCCGGGGAGCGCACACTCCAGGGCTGGCCCAGGTGGTGACTGGCGCTGACGTCCCCAGTGGAGCACCCTTCAGCGAGGAAGGCAGTTTGCAGAAACAGGGAGTTCCTGGGGGCTGGGCTCTGGGCACCTGTGCTGGAATCTGTGAAGGCCTCACCTGTGGTTCTGGCCCTGGGATCCCCTGTAGGCAGGGGTCTCTGTGAGGGGCCCCCCTCAGCCCCTGGGGTGCTTCAGAGTAGGGGCGAGGGTGCGGCTTTCCCAGCTGAGGAGGGGCCAGTCTGTGGGTTCCTTGGGGTGCCCCCCACCCCGAGGAAATGGCTTGTGTGGTTCTGATGCCTGCAGGGCATCCTGTGCTGGGCGTGTCCTGGGGTGTGGACAGGGGACGGGGTCCTGTTCTTTTGGCAGAAATGATGGGGCACCTGACTTAGGAGACCCTGGAGCAGACCCCACTACTGAGCCAGGCCACAGGCCACGGGCCTCTTCATCGGCGGCCTCCTCGTGTGAGAAAGCCTGGCTTGTTCTGCAGGGGCCTCTGCCTGGACTTCCTAGCTGTTTTCCAGGGACCAAATCACAGTTCACCTGCTGCCCTTTCTATGGACCTGGCAGGCTGGGTTGGCTGGCACTGGCCCTGCTGCCCCACTGGGCCCTGTCCCCATCTCAGCTTGGAGATTCTGGCTAACCTGGGTGTCCTCGGGACCTGGGGCCTCTGATGGTGCTTGGATGGGACCCTCCTGCCGCCCTCACCTCTCCAGGGCAGCACCCAGGCTCAGGCCTGTGGAGTAGTGGCTTCCGGGACACTGGCTACTAACAGCAGGTGCTTTGTTCCTGCTTTGGTCCCTGAAGAGAAGGGAGGGCCAGAGGGCAGGGCAGTCTGGAGGAGAGGCCTGGGGCTCCATGGCTACCTTCCCCCACACCTCTGCACGTGCTCCCCAGGCCCCAGGGTCCCTGATGACTTCCAAGACTCCCAGCAATGGCTAAGAGTGGGGCTGTTGCGAACGTGCGTTCCCTCCGTGGGGGCCGTCGGGAGGGGTGAGAAAGGCAGATGAAGAGCAGGCGCTTTGTCACTCCAGGGAAGGGACCCGGGGGGCTGGAAGGGAAGGAGGGGATACTCGGCCTCTGTTCCTGCTGTACGCCACGGGTGCCTCCAGCCTCAGGAACAGGGATTCGCGTGTGCTCTGTGTTACAAATAAGGACACTGAGGCTGAGATAAGCAACTTGAAACTGGGGCAGGGTCCCCAAGCCAGGATGGGGTGGAACTGGGGTTCGAACCCACTGACAGTGACTCCAGAGTACCTGCTTTTCCCTTTCCCCTTGTTCCCAGCCCAGCGCTTGGGGCTGGTGAGGCAGCCCTGCGGCAGGCCTGAGCTCTGGGAGGGGCGCTCCATCTTGCCCCTGAGCAATGGCTGCCCTGGCTGAGGCCCAGCCCCTCCCCACGGGGTTCCAGGCGGCACCCAAGAGACCCCCACCGTCTACACCGTAGTTCTGAGCGTGTGAGGGACAGTGATGGGACTAGAACCTCTGAGGCAGCCTTCGTTCCCACCGGGCTTGGGGCTGAGACCACGGACCCCTTCCAGGCAGGGGGTGTCCCCTGAGCCCTTCCCTGTGTGCGCAGTTACGGTGGAGCTGCAGGGGACGTTTCCTCACCAGGGGCCGATGCCCTGGTACATCCATTCGACAGAGGAAAGCAAAGCCCAGAGCGGCTCCGTGTCCTACAGCTGGGTTCAGCTACAGGATCAGAAAACCCTCAAGACAGCAGCTTAATCCACAGAGAAGTTTACTTTTTCATACAGCAAAGGAGACCAGATGGGCAGCCTAGGGAAACAGCAGTTAGTTTCCGGCTCCTTTGACCTCTATTCCCACCATTTTCAGGGTCCCAGACAGAAAAGGGGTGCTCTTCCTCTTAAGGATGCTCCCCGAATTGAACCCCACGCTCTGCTGGTATCTGGAGGCCGGGACCTAGTGGTTGTGGCAGCTCCTGGCTGCAGGGCAGGCTCCTGTCCCCATGGAGCACGTGCCCACACCACACGCCCAGTGTGGGGAGAACGCACAGGGGACTTGGGATGTCGGGCAAGGTTTGACCCAGATTTGCCGGCCAGTGCATGGTCCCGGGTCCTCTGACAGATGTCCGGTGATGACAGATGCCATCGGGGGCCCTGTGTCACCACAGCACTGGGGTCTTAGTCCCAAGGGAGACCGTGACCTTGGTCCTCCAGAGCGCTCCAGGTGTCTCTGTGCAGGCCCAGAAATTGGAGCTGTCCTGACTGAGGGATGGGAGGGCTTCTCTGGCCCCACCTCCTTCCCGCCCGCCACACCTGCACTCCTACACATCCGCTTTGAGGAGTCACGGGGACCCCCCACATCCGGGTGTTTGTGTGGGCTGGACCCCGCACCCCTATGGACCCATCCCGCCTTGTGCTGCAGCTTGGATGACACTTGTCGGAAAACACCAGATTCCTCACTGGGGTCCCTGTCCCCGGTGGCCCCAGCGAGCCCCAGCAGAGGGGGAGGGGGCTGCCCTGAATGAGCTCACGCAGCTGAAGATGGGCAAGTCCTGGCTCAGAGAGCTGCTGGGTCTCCTGGGAGTGTCCCAGCCCAGGACCAAGGCAAGGGTCAGCGAGTGGCCTTCCACGAGGACAGCCTGGCCAGTGGCCTGGGCCCTGACCTAGAACCGCCTCCCAGCTGCCTGAGCCAGGTGCTGGTGGGATTGGGGGCTTAGGCACATTGAGGGGCCTTTTGCTTCGATTTACTTTGGACTTTTTTTTTTATTTTTTGAGACAAGGTCTCGCTCTGTTGCCCAGGTTGGTCTTAAACCCCTGAGCTCAAGTGATCCGTCTGCCTCAGCCTCCCAAAGTGCTGGGGTCACAGGCATGAGCCACCGTGCCCGGCCCCACCCATTTTGGATTCTTCCCCCCCTCCCCCCCACCCCCTAGTCATCCCCATCACAGCCACTGTTGGTGGAGGTCCTGCCCTGGCCCGATGGTGCCCCGGGTGTCTCCGCCTCATAGAATGTAAGCCTGCACACCCTTCCACAAGAGCCTGGGAGGTCAAATGCTTTGCCCGAGGCCATAGCTGGGAAGAAGGGAAATGGGATCCAAATCCCCGTCAGGCCCAGAGCCTGAGTGTGGGAGCAGCCCAGGTGCCTGGGGGCTGAGCTCAGGCGGTCTGAGGAGGCTGGGTTCCTGCAGACCCCAGAGGGGTCTCTTACGGGGCTTCGCTCGAGGCCAGTGGACTCCAGTCTGAGGGCTCCTGAAAAAGACTGAGGCAGCACCTGGGCTTTCCCTCAGCAGGAGCCCACTGCTCCGATGCCACCAGAAGGGCCCAGTCTGGGCTCAGCCTCACTTAGTTTTGGGTGCTGGGCTGCTCCCTGGGCCTCCTGCCTTGCTGGGCAAAGCTGGCACAAGTCACCCGCCTGGCAGTGGCCAGCAGGGCTCCCTGAGCTCCAGGCTTCCGGCAACCTTGGCTTTGCCCCTGCTCCCCGGGGAGGCAAGGAGTCCAGGACCTGGATTTGGGGTCCGTGTGACTGTGTCCTGGTCTGGCACAGCGACACCTGCCCCAGGCTTTGAGGAAAGGACAGGGCAGCCCCTCGTCCGCCTGTGGTTGGTGGGAGGGGAGTTTGAGTGAGGCAGGGTGTTTGGCACAGGACAGGGACTGGGCTGGGCAAGCTGGTGGGGGAAGCCTGGGGACAGTGGCTGCTCTGAGCTTCCTGCTGGGGGAGGCCGGAGCAAGCTCCCAGCCCTGCTGAGGGGTTGAGGGGACTGCGGAGCCCGGGGGAGGGAGGGAGCCTCAGGATGAGCTCCTAGAGTCCTACTGGGGGCCCGCGCCGCCCCAGCACGACTCTGCCAGCTCCGAAGCAGGGTTCCGAGGGGGGCTCAGGCCTGTTCTGGCTTCCCTGCTGTGTGGCCTTGGGGAAGTCACTTAACTTTGCTGAACCTTGAACCTCGCATTCCTCATCTGAAGAGGGGGGTTATGATCGTACCTACCCTGGGGGGTTACTGTCAGAACAAAAGGAGGTGACTCATGTAGAGCCCTTGTCTCGAGGCTTTGCACACAGGAGGTGCAGGGGGCCTCTGTGCTTAGAAGGCGATTTTTCTCTGCTTGGGTTCCCGGGGGTGTCCTCGGCCGCAGGAGCCTCTGCAGGGCTTAGTTCAGTCCCTTCCTCTCTGAGGAAACACTTTTTTTGTGTGTGTGAGATGAAGTCTTGCTCTGTCACCCAGGCTGGAGTACAATGGCACCATCTCGGCTCAACGCAACCTCCTCCTCCCTGGTTCGGGTGATTCTCCCGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCAGCTGCCACCACGTCTGGCTGATTTTTGTATTGTTAATAGAGACGGGATTTCACCATGGTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCTGCCCGCCTTGGCCTCCCAAAGTCCTGGGATTACAGGCGTGAGCCACCCGCCCATCCAGGAACCGCTTGTAAAGTGAGTCTAGACTTTCCCACCAGCTTTCAGAAAGCTCTGAACTATGTACGGGACACCGCGGGGGAAGTGCGGTGGCCTCACGTGGCTGGTGCAGATGGCCCTTTGTCCCCTTGAGGACATCAACTTCAACTTTCTTCCACCCCCAGGGTATACCTTTCTCCCCCAGCCACACTGTGGGCTGCAGAGTTCTAGAGAGCCACAGCCTCCCGCTGGCCTGGGGCAGCCTCCGTCCGTCCATCTGTCTGGCCTGAGGACCAGGGGCCGGTGGTGGGCGGCGGGACACAGCGCCTGCTCAGCACCGCCTGCTGGGCGGGGGTTTGTACCCCGTGTCTTTCACAGCTGAGAGAAGTATCAGTGCACGATCCAACCCCTAAGCAGCTTAGATTAAAAAAAAAAAAAAAAGGAAAAGTTTTGGAGCTAGAGGGTGGTGCTGGCCACACGGCAGTGAATGCGCCGAGTGCCACGGAACCGTGTGCTGAGAAATGGGTACAATTATATTGTTTAGGTGGTGCGTGTTATACCACAATCAAAACAGAGGAGGGCTCGGCGCGCTGGCTCCTTCCTGTCATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGTTTGAGACCAGCCTGGCCGACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGTGTGGTGGCGCACACCAGTAGTCCCAACTACTTGCTAGGCTGAGGCAGGAGAATCGCTTGCCGGGAGGTGGAAATGGCAGTGAGCTGAGATCTCGCCACTGCACTCCAGCCTAGGTGACAGCAAGACTCCGTCTCAAAAAAAATAAAAAATAAATGAAGATCTTATTTTTTAATAATTTCAGATTTACAGAGAAGTTGCAAAGATATTACGGGGGACCCCATGTGGCCCTCACCAGTTTCCTCCCTTGTTAACATCTTACATCACCAAGATGCAGTTGTTAACACTAAGAAACTAGCTGGCCGGGCGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGAGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAACTAGCCAGGCCTGGTGGCAGGCACCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATTGCTTGAACCCGGGAGGCAGAGGTTGCAGTGAGCTGAGATCACACCACTGCACTCCAGTCTGGGTGACAGAGTGAGACCCTGTCTCAAAAATAAAAAAGTAAATAAAAGATGGAACTGGCCAATGTCACTACCAGAGGGAACCAATGTCCCTTTCAGATGTGGCCCGAGCCTCCTGCAGGCAGCTAGCTTTGGAATTGCAGGTGTGTCTTGGCTGCTGCTAGAAATCATACACATGTCCTTCACAGGAGATGAGTGTGGACCTGTCCTGTTCTTTCCCCGCGCCCCAGCTGTCTGTGAAATGGACCCTAATTTACTTTCCCTCTTTCTACTGGTGGCTATTTAAGCATTTTCAGGTTTTCCTAATTCACTGCACACTTCAGCACCACAGGCTTCTCACTCCAGCCGTCGGGCGAATTCCTGGAAGATTCTGAGAGGGGAGGGGCCAGGTTTCCTCAGGGCTCTGGCCGGGCCTGCCAACCTGCCCTCCACAGAAGTATCTTGTCTGTGCGACTCCTCACTCCTGCCAGCCGCTGGGCCTGTTCCCAACACCCTGGCTGGCACCTCCTGTTATCAGGCGTTTTAATCTGTGCCAGGGGGAAGGATGAGGACAGTCTCTTGTTTCCATTTGCGCTTCTTTGATTGGCGACACGGCCGTCTTGCTAGCACCAGACAGTTCTGTGTTTCCTGTTGGTGAACTGCCGGCTTTTGCCTCCTCGTCTTCTTGGAGCGTCACAGGGGTCCGGGAAGCTGGATTGCGCAAATGAGTGTGGAGGCAAAACAGCCCTGCAGTTCCCCTGAGTGTGCGGGTGCTACCAGCCCGGGTGTGCCTTCTGGGTGGGAGGGGACGGTGGCCGGCGCGGCCTGGAGAGGAGATATCTAGAGTTGGCTGAGGAAGGCAGATCTGAGGAGGCCCCAGGCTTCCAAGTCCAGGGACGGACGGCTGGACTCATCACCAGAATTAACCATTAGGCCCCCCTTGACTCAGTTTCCCCATCTGCAACAGGGGGTCATGAGCATTGCCCCATCAGCCTGAGGTGGTGCTGCCGCAGGCCTGGGCTCACACATGGAAGGGCAGAGTGCCAGGGCTGGGGAGGGGACAGGGGTTTGTGTCGCATGGGAACAGACGTCAGCCAGAGAAGGTGGAGAGTTCTGGAGATAGAGGGAGGAGATGGCTGCTAGACACCGAATGTGCCCAGCGCCCATGAACTGTGCACCCGGAAAAGGCCAAGGAGATACATTTTATGTTACGTGTATTTTACCACAATTTTTTTTTAAAGGCCGGGCGAGTTGGCTCAGGCCTGTAAGCCCAGCACTTTGGGAGGCCGAGGTCGGCAGGTTGTTTGAGCCTAGGAGTTCGAGACCAGCCTGGCCAGAGATGGTGAAAGCCCATCTGTACCAAAAATACAAAAACTAGCGAGGTGTGGTGGCTCACGTCTGTGGTCCCAGCTAGTCAGGAGCCTGAGGTGGGAGGAGCCCAGGAGGTGGAGGCTGGAGTGAGCCCAGATTGTGACACTGCACAATGTGACACATTGTGTCACAGAGCAAGACAGAGCAAGGGGAGCCTGGGTGACAGAGCAAGACCCTGTTAAAACAACAAAAATCCCCACCAGTATGGCTTTGAGAGAAGGCCCCGGCTTTGAATCTCTGCTCTGTGGCCTGGGGCAGTTACTCAGACTCATCTGTAGAAAGTGTGGGGCCCTTAGGACTGCTGGGGGATCAAATGGTGGGGGGCACTAGTCTGCATGGAGAGGGGAGCAGCACTGGCAGCCCCCCAGTCAGCGCTGGCACAGCCTTGCCCCGGCCATCCACCCCTGCTGGAGCTTCGGAGTGGAGCTCCGTCCTCCTGGCTCCATCCCCGCCGGCTGCCCTGTGATGGGGTGCCCTATCTGGGGTGTGCCCAGAGCTTCCTGGCAGCACAGCAGGGCAGAGGTTGGGACGCTCGGAGCTGGTCAGAGTCTTCGGGTACCCCTTGGACATCCCTGGTCCCAACCATGACGGGCTGCTTGGACAAGGCCACCTCACATTTGCAGGTGCTCCAAGGGCAGCCCCCAGTGGGCTGGGCCCCTGCCAGAGTGGGGGCTGCTGTGGCCAGGGCTCAGGTGGCCCAGACCCTGGCTCTGCTGCTGCTCCTGGTGTGACCTCAGACAAGCCCCGAGCCCCTCGCCGCCTCTTCACGGGGAAAGGGAACCGGCCTGATTCTGTAGGGTAGGGGTGAGAGAGGGTCTCGGTCTCGGCTCTTTTCTGGAAGAACCTTTCGGAGGTCGTTTCAGAGGTCTCCACTGGCGCCGACACTTTCTTCCTGATGTGGCCCTGCCTTGAGGGGCCAGTGACCTTCCCCAGGGTGTGTGGGGCCCCATTTCCTCTGCTGGGGTGCAGAGGCTGCTCTCCCCGACGTGGGTCCTTCATAGCGGACGTGAGAGCCAGTGCCAGTTCCTTTCCGGCTGGGTCCCCTGTGGGGTGGATGAGGGCTGGGTGGGCCCTGGATGTGGATTTGGAAGTGGGCGCCTTCCCATGCTCCTAGCATCCGAGTTCCAGAGGCTCTGGGTTTTCCTCTGTTGCTGGGGAGACGGAGGCAGGGCAGCCGTCCAGGTGGGTGAGCCGGGCCCGGGACTCTGTCCGCTTCAGGGGCTCCCTCCCCTGTGTCTCCCGGTCTCCTGCCCCGTGCCAGGAGGGCCCCTCCCCAGCCTCCTCCACACCCCACCCCCAGGCCTTCGCGCCCCAGCCTCGGCTGCGGGATCTGTGGGACCCGTGTTCATGGTGGCCTCCCCTGCAG
Seq C2 exon
CATCATCGGCTGGTTCGTGCGAAGCTTCAAGTACTTTTACGGGCTCCGCTTCGAGGTGCGGGACCCGCGCAGGCTGCAGGAGGCCCGTCCCTGTGTCATCGTCTCCAACCACCAGAGCATCCTGGACATGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169692:ENST00000371696:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0155316=Acyltransferase=PU(30.9=63.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains