GgaINT0124118 @ galGal4
Intron Retention
Gene
ENSGALG00000023517 | AGPAT2
Description
1-acylglycerol-3-phosphate O-acyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:325]
Coordinates
chr17:7737254-7740869:+
Coord C1 exon
chr17:7737254-7737505
Coord A exon
chr17:7737506-7740735
Coord C2 exon
chr17:7740736-7740869
Length
3230 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
CCTCTTCTCCTCCTCTGTAGGAT
3' ss Score
11.79
Exon sequences
Seq C1 exon
CGGAGCGGAGGGGGGGAAGTGGGGCGGCGGTGGAGTCGGACTCGGAGGGTCCCGGGGACGCGGCATGGAGCCGGGTTGGCTGCTGTGGGGCGCGGCGGTGCTGCTGCTGCTGCACCTCCTGATGGAGCTCAGCTCCGCTGTGAACTTCGTGGTGCGCATCGGTTTTTACTACGTGTTGTGCATCGTCTGCTCCGGGCTCACCGCTCCCGTCTGCCTCCTCGTCAACGGCGGCCGCACCGTCAAGAACATGAG
Seq A exon
GTGGGTGGGGGCGGAGGGGGGCGTTGGGGTCCCCGCAGTGGGGGTGGCACGGAGCTGTAGGTGGGGAGGGGGGGTCTGGGGGATGCTATGGGAGGCTGTGTTTGCTGCGTGAAGTGGGAACTCTTTCCGCCTGGGAGGTGGGCTGGGGGCGTCCTTAGCTTAGGCTGGGGGCTCCTCCCTGCCGTCCATCAATCGGAGATGGAACCTCAGTGGGGCTGTGGGATGCTGGGGCCCGAACCACGAAGGCCACGCAGCAGCCACGGCTGTGCCCGGAGGGCTCCCAGGAGGCACATCGTGTCCTTTCAGAGGGATGTGGGGCGGCCCCACGTGTGCTGATGGGCGCTGGGTTCCACCACCATGTGAGCCCTCCTGGGTTCCACCACGTGTGTGGGGCGCTGAGGGCAGGGTTAGCACTGCTGTGGGTGGCACAGAGGAATCGGGGCTGGTGTTGGCTTCCGGGCCCCGCTGTCAGCTTTCCTTTGGTGCTCTGTCTCCCTGCTCCAAGCTGTGTGTGTAGGGAGGCTCCTTTGGGGTGGAGCGGAGCCCTCTGCCTTCATGCATCCTCGTGGATGGGAGGTGGGGCAGATCCGGACTTTGGCAGCCGTGGGGTTGTGGTGCGCTGAGCTCAGAGCAGGGCCCGGGGAGGAGCAAGCAGTGCTGGTAGGAAGTGCCCTGTGCTGTGCATTGGGTGCTGCTGGGAGCTGCTCTGCCCTGCGGTCCGTGCTGAGCTCCCAGGGGCTCCTCCCAGAAGCTGACAGCAGCCCTGTAACCGGGAGCGTATGATGTCAGCTCTCTGCTCATCCCTGCAACTTCTGACATCTGTAAACTTAGCAAGGAACTTCTTCGGGAAGAAGAGCTCCCTGTGCTGAATGATCCTCCTGTTGAAGCTCAGAGCTGAGCTGTAGCCAGAACCACCCTTTTCCTGTAGCCCAAGCCCATGGTTTCCATTCGCTGGCTCCAGCTGCTGCTGCAGCTCCCAAATTCTGCGAGGTCTGTGGGTCCTTATTGCTACAGCATCCCTGCGGGGCCGTTTGTCCCGGTGCTGCTGCTGGGGGTGGGCAGTGATACCGGGCCGTGTCCGTGCTGGAGCAGGACGCCCTGTCCTTGCCGTGCGGGACCATGGGAGGGATGCCCTCCTCCCGTAGATAGATGTGTTTATCTAGTGGTGAAACCTCTTGTGAGGGCTTCCAGCCTGGTGAGCACCCTGCGTGAATGCTTCACGGTCAGAGGGTCCTAAAAAAGCCCTCCGCAGAGCTGCTTGGGGACACGTTGCCTCTCGTTTGTCCCCTCGCTCCCTGTGTCTGGCAGTCAGGACATCAGATTTACAGCTGTGGCTGCACCACGCCGGGATCATCTTCCCCACAGGGAGCTGCTGGGGGGGCCGGAGCTGCTCAGCCCCACGGTGACGTGGCTGCTCGGGGCCGCCCATCGCCCGGTTCCTCCTGGCTGCTGCCAGCTCTGCCCCTTCGCCTCTTTCAGCAGCTCAGGCCACGTCTTGTGCAAGGAAATGCTCGCCCTTCGCTGACAAGAGGAAGTTGGATGGTTTGCTCTTGAGTAATGAGTAACCAGCCTCTCCCAGCCCGCTTCTGAACAGTGTGACTGCTGGAGCAACGACCTTGTTTTTGGTTGGCAGGCAGGAGGGAGGAGAAGTGGGATGTAGGTCAGTCTGGTGGTGCAGCCTCTGCCGTGCCCCCCCCGGTCAGTGTCACCCTGGCTCTCCTCACCTGCCCTGCCCCGGCTGTGCTGCCCCTGCCCCGTGTGGGGCTCTGGGTGCGGTCTGACCTTTGCAGCAGGTTTGCATGCTGGGGATTGATAGCAGTTGTGTCATGCAGTGGTGTAACCTGCGGGCACTGCCCTGCCCTGAACTCCGGTGTTAGAGCCAGAAAGCCCCGAGGGTGTGTGCATGGGGTGCAGAGGTGGATGTTGCTTTGGTGCAGGCTTGTGGCTGAAGGGATGGGGATCGTTTGGGGGAACAGCTGCTGCCAAGGCAGGACGAGATGCCAGCAGCTTGCTCACCTGCTGCCCAGGTGGGTGGTGGTGGGTAACCCTCCAGCAGGACCCTGTGGGTGGGGGGTGGGGGAAACGAATGGGACCTAATATTGACCCTCAGACCCGTTCCTGCAGGGAGGAAAGCTCTCTGCTGTCAGGGAGGAGGTGCAGAGCATCCTTTGGAGGAGGAGAAGGGCAGGGCAACTTGCAGGTCTGCTTCAAGGCAGGCAGAGTCGAGCTGGTGGCTGCTCCTGAAGGCTTTGCTCACGTGCAGCCTCCTCCGCCTCCCATCCTGGCAAATGGCTGCTCCCCTGCCCAAAATAGCCCTCGTGTGCTGCCAGCTTTTGGCTGCGTCCTTTGGCCCACTTGGAGGGTCCCCAGCTCCCACCTGTCCCAGCCCTGTAGGCTCACAGGGGTTTGGCCACAGCGTGGGACTGGCTGTGTGCAGCAGGGGTATGGCAGGGCTGAGCTGAGCTGCTGGGGAAGAGGGCTGGGAGCTTTGGAGGATGGACCCGGAGGTCCCTGGGGGAGCTGAGCTGGCAGGAGGAAACTCTTGGCTTGAAGACTTGGGTTATTCTCAGGTAATGCCACCCCGTGTTGGTAGCGCTGCGGTGAGCAGGATTAGCACAGCATTCCTGGGGCGAAGGGTGCAGGTTAATAACCAGTGCTGGGGAGTGCCAGTTCCTGGAAAAGCTGTTTGAGCAGCTTGTGGGGCTGTGCTGACTGCAGCAGGAAAGCACCGGTACCATCCAGCCAGCTTTACAGCCCTGACATGGGGGGAAAAAGGAGCGGTGGAGGGGTGGGACTGGCAGCAGGAGGAGTGATCCCTGAGCAGGCTGTGTAATCAGCCTCGCTCCCTCTGCCCTGGATGGAGGGCTTCCAGTTTGCCCTCTGTTTGCAGAGTCCTTGCACCTGTGCTGGGCTGGGCTCCCCTGCAGTGAGTGGTTGTGAGGGGATGCTGTCAGCCTGGAGGGAGCAGAGAGCTGTGGCTCTACCAGCCCCAGAGTTACACTCTGCTTCTCCCAGGATCCCACTGACATCTGCACATCATACCAAGAGGGGACAGTGCTTCAGCTGCGTGCTGAGCACTCTCAAGTACGTGGGACTGGCCGTGCAGGACAGGCACGGGGGTGAATAACAGACAGGTGGGGCTGGAGGCTGTCGCAGGGCTGTCCCTGTCTCCTTGCCCACACTGCATCCCTGCCCTGCTGCTGTCTGACCCCTCTTCTCCTCCTCTGTAG
Seq C2 exon
GATCATCAAAACCGTGGTCAAGTCCTTCAAGTATTTCTTCGGCCTGAGGTTTGAGGTGAAAGGACTGGAGAACTTTGAGGTGGAGGGCCCTGCCATCATTGTGTCCAACCACCAGAGCATCCTCGACATGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023517:ENSGALT00000039021:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0155316=Acyltransferase=PU(22.5=63.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]