BtaINT0017831 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014051 | ANGPT1
Description
angiopoietin-1 precursor [Source:RefSeq peptide;Acc:NP_001070265]
Coordinates
chr14:59385220-59390315:+
Coord C1 exon
chr14:59385220-59385321
Coord A exon
chr14:59385322-59390301
Coord C2 exon
chr14:59390302-59390315
Length
4980 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
AACCTGTGGTAAACTGTTAGGTA
3' ss Score
1.96
Exon sequences
Seq C1 exon
GTATTTTGCAATATGGATCTCAACGGGGGAGGTTGGACTGTAATACAGCATCGTGAAGACGGAAGTCTAGATTTCCAAAGAGGTTGGAAAGAATATAAAATG
Seq A exon
GTAAGTTGGAAGAATTTACATAGTTTTTGACATTTTATAGTGAGATTTTCTTCACAACACTATGTGATAAGCCCTTGTATTTTTAGATGTCTTTTAAAAAATAAAATGATACATTCCTGACATTATTCTCATTAAACACAAAGCATTCATAAATCTTTTTCAATAAATGATTTCCATGTGTACATCAGAAAGAAAAATATATTACTGAAATTATTTAGCAAACTATTATATATTGTCTGAATTTGTTCCTGATTGAGTGAGGGTGGAGGAAGCTGGAATTTGGACCCAGTCTGGGATACATGAGCCAGGACAAGAGAAGTGTATAGGGCTGTGAGCTGTGGAGCAGAACTGGTGGGCACCATCAATGACTTCACTCGAGTGGCTGGCAAGTTGCTGCTGGCTATGGACTGAAAACTCCTCCAATGTGGCTAGGGTGGGCTTCCCCCAGTATAGTGATCCAGGGTCATCAGATTTATTATGTGGCAGTTGACATCCTTTGAGCACAAAAATAGAAGCTTCCAGGTCTTCTAAGATTTATTAAACCCAGAAATGGCATGTCACTTCTACTGTAATTCTTTTAGTTAAAGTTGATGACAGGACCAGTCCAGATTCAAAGTCAGACAAGTACACAAGGGTTTGAACTGTGAGATGTGATTGAGGTCTCCAGAATAACAGTAAATAACATCAGTACCATCATCACCATCATCATAGCTACCCTTTCAGTATTTTTATGTACAAGTCTCATACATAAATTCTTATCTAATTTTTATATCAAATGTATCAGTTAATACTGTCCCCATTTTAAGAGGAAACTGAGCAAGTTGGGAGATCAATCTTTCCAAGATAATACAGTAGATGGTTGAAATAATCCATAATCCAATAATCACATAGTGCCTACAATATTAACTGTTAAAATCTGCTGACGAATTATCAAGAAATAGTAATGGAAGAGGATTTCCTTTTGCAAACCAATCTCATCTTTTACATCTAAATGTTCTGGGTAGTTCTTGTCTTGACAAATTTTTGACAAATTTTCCTCTCAGAAAGTAAAGAAAGAGATAAAGAGAAATACTGTACTAACCTAAGTTCTGCCTTGATATTCATGTTGAAAATGTGTAAAAACAGTGGTTTGCTTGTCAACATTGCAGTTTACCCATTAGTAGGTTAGAACTGACCAAACATCAGTAAACGAAGGGTTTTAAGAGATGAAGGAAAGTGTCTACTGGGGTCTCTTTATCTACAGTATTTTTTATCAGATTTAATGCTGAAAGTAAGTTAATAAAGTTTGGAGTTACACAGAGTTGGAATCTTGATATCTTCAATAATCTATAAACTCAAAATAGAAATGTAGGCTAAAGCCAACAAGATAGAGTTCTACAAAGATAAATGTGAAGTCTTTCAACCTAGACCAAAAACATACAAGATTAACTGTGAGAACTTAGAAAAAGATGATGTTACTGAGCAAGGGCTAAAGAAGCCAATACTATGGCACAGGCTTTTGAAAAAAGAAAGAGCTTTCATTTTGAGGTAAACTAGAAAGGAGCCAGGAGGCAAGGCTCTCAAATCTGTCTCCACAATCCAGAGACCACGGTGAAATTTAAATGACTAGGGGAATGTCATACTTATGGACGAATTGGCTAGTCTTGAATCAGTCCATACAAGCTGCAGAACCCAGGTTTTATTTATTAAAAGATTTCTTGTTTTGTAAAGTCCTCCAGAGGCAACATTTCAATTCTTTGGTTCTGTAGATTGAGTGTTCTTGGTTCTGGAGTCACCCTGGAGACATGGCCTCCTGTCTGCACATGCACAGTTTTAGTCATCACTCTGCCACTTGAAAGTGGAGTGGTTTTTAGCAAATCATTTAACCCACACCTTAACTTTCTCACTTGTTGGAAGGGGATATTGCTAATAGTACCTCACTTGCCTTGCCAGGGGTATTGTGAGAATTAGCTGTAAGTAAAGCACTTGGCACATTGAATTGTCAGTAAACTGTAGGTATTATTATTATCCAAGATTAAAACATCAAAAACTGCAAATGTTTTCTTAACTCTGGCAAAAATATTATTTGGCAGATGATCTTAAGTCATGATTATTTTCACTACTAAAGTGAGTTTTGAAGATGTTATCTGAGAATTAGACTATAGCTAAAGACTCTGGCAAGTCTGAAATACATTATTATTAATACTAATAATAAAAGAAAATTTAATATAAAGTTGTCATCACGGTGACTTTCCAAAATGGTGATGTACTAGCTGTAATCATCTGCTGCCTTGGCAAACTAGGTATATTAAGTAAGAAAGATTGACATATGAAGGATGTCATTGATTCATGTCTTATAAGCATTTGTCAAATGTGTATATTTAAGCAAGTTTTTTTTATTGTTGGAATGGGGCTGAATTATTCTTTAATCATAGCTTTTGTGAAGTTTTCTCCTCTCCCTTTTTCAGGGGAGTTAGAACCAGGGATGGGGGAGCCTGGTGGGCTGCCGTCTATGGGGTCACACAGAGTTGGACACGACTGAAGTGACTTAGCAGCAGCAGCAGCAGCAGCAGAAAGACTATCTTTTATTCAAACTAGAACAATTTATCAGCTTAGTGTCAATTCTACACAGTCAGAAATGAGATAAACTCTAAAATTTTGAAACATTTTGGCAAAAATGAGTCTGATGACTTCTTTTGTTTTAATTTAAAAAAAAAGCTGTGATACATATATACAATGGAATATTACTCAGCCATTAAAAAGAATACATTTAAATCAGTTCTAATGAGGTGGATGAAACAGGAGCCTATTATACAGAGTGAAGTAAGTCAGAAAGAAAAACACCAATACAGTATACTAACGCATATATATGGAATTTAGAAAGATGGTAACTATAACCCTATATGCAAGATAGCAAAAGAGACACAGATGTATAGAACAGTCTTTTGGACTCTGTGGGAGACAGCGCCGGTGGGATGATTTGAGAGAAGAGCATTGAAACATGTATATTATCACATGTGAAACAGAATATCAGTCCAGGTTCGATGCATAATACAGGGTGCTCAGGGCTGGTGCACTGGGATGACCCAGAGGGATGGGATAGGGAGGGAGGTAGGAGGGGGGCTCAGGATGGGGAACACGTGTACACCCATGGCCAATTTATGTCAATGTGTGGCAAAAACATTACAATATTGTAAAGTAATTAGCCTCCAATTAGAATAAATTAATTAAATAAAAAATAAATAAATGAAAATTTTAAAAAACACAATTTATCATATATTATAATTTGGTTAACTGTCACCAAAACACATGGTATAAAATGTTTCAGTTGTTTCCTCCAGAGCTTTTCTTTCACCTGCAGACAAAGCAACATGACTCCACAAAGAATGAGCATAGACTCCTTATGCCAGCTCTTATCAGTCACACCCACTTCTGCTCCCTGAATCAGAACCGGCTGCTACATCCTTTGGGAAAGAGAACTTGACATGTACCAGTTACTCCTTAATCTTCACTGTTCTATTATATACAATAAGATGCTTCACTTCTTTCTCAAGCACTGACTGTAGAACTAAAGTTTCATCCCTCCTTCCTTTCTGCCTTTCCTCTTTCCTTCCCTTTAAACTGGTTGATATCTGTGGGCTGACTCTTGCTTCATAAGGTCTCCAGAACATATGTTAAAATTGTCAACACATGAAGTTACAAATATATAATTATTATTTTTAAACCTTTCTCACCATGGAAGACTTGCAGTTTAATTGATTCTTAATGTTGGCTTTAAGACTACAAAATCTTTTACCTAAGCTTTGTTTTCACTTAAAACTTCCTTATGAGGAGATTCAGCAAAATCTGGTTTACGGATTTGTAAAGATGTTTGCCAAGGGGGAAGTCTGGAGTGGGCTCTTTTAATGAGGCACTTAGGGAACAACATTAACTCCTTCAAGCCATGAGAATACCATTTAGTGGCCTACAGCAATAACACTTATCAGCAGTACTTTTGCATATACAGCCCAATCAAGCTAGGCGTTCCAAACCGTACCCCAGTGGCCTAACTTTATAGAAGGTAGTGACTAATGCCCTGGAGACAACCTGTCTTTGTATTGAAAACATTTAGCTCCATAAACAGAGCTTCCTATTTACACAAATATTTCATTCTGAGCACCATACCTTTTGGGAGTTCTTTGTTTCTGGAAAGAAATTAAGAGCACATTTTCAACTTCATTTTATCGTATTCACATTAAAAGGAGAAAAATATATATCAGAAATTTAAAATGCTGAAATATTCATCTTCTGATCTTTCTTGGGCTATCTCAGTAGTTAGAGGAGATGCACAATTGAATTGTATATAAAGCACCTTTGGAAAGCCACAGCTCAGTAACCCTGACTTCTTATTTGTTTTCTTTGATCATTTTATGAAAAGAGATGAAACCTACAGGGTACATAGACTGTGTCTGGTTTCAATTGTGTTTCAGTCATAAAAAGTCAACACTTCCTACGAATATTATCAGACAAAACAAAGTATCAGAGACAATTATTTTATCAACTTGGAAAAATACGAATCAAAACTGAACATTTTTGCAAATTTTGGCAAAAGCTAATGAATATTAATCTATTCTCTGTGTGCTTTTTTTTTTAAAGCAAAATGTGGTTTATAAGGCCAATTTAAAGTTAGCATTAATTTAAGCTAAATTCCAGGGTCTTTTGCCTTTTATTAAAGAGCTAAAGGAGAAATAAAATTGATAAACAATCTATCTGAATTATGATATCAGAATCATAATATGTGATTTTTTTAATTATGTTGTTATGATTGGCAGGGTATGGTATAGCATCCTTGGATTTTATTTATAAAAAAAGAACAAGTTCTGTTTTTATTACTATTGTTTATTCAAAGGACTTACTGCTTTTTCAGTGTCAACACTGAATTTTGTATAAGACTTTACTTTCATTCTTATGACTGTTGCAAGCTATTTGGAATAAAATATAAAACCTGTGGTAAACTGTTAG
Seq C2 exon
GTATTCAATAATAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014051:ENSBTAT00000018675:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(15.3=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(1.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development