MmuINT0014997 @ mm9
Intron Retention
Gene
ENSMUSG00000022309 | Angpt1
Description
angiopoietin 1 [Source:MGI Symbol;Acc:MGI:108448]
Coordinates
chr15:42291213-42299803:-
Coord C1 exon
chr15:42299702-42299803
Coord A exon
chr15:42291380-42299701
Coord C2 exon
chr15:42291213-42291379
Length
8322 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
TGTGTTCTATTCTTTCCCAGGGT
3' ss Score
10.73
Exon sequences
Seq C1 exon
GTATTTTGCAATATGGATGTGAATGGGGGAGGTTGGACAGTAATACAACACCGGGAAGATGGAAGCCTGGATTTCCAGAGGGGCTGGAAGGAGTATAAAATG
Seq A exon
GTAAGATGGAAGAATTTACAGTGCCCTTTGATGTTTTATCATGGGTTATCTTCATGCACAATATACGATAAACCCTTGCACTTCTAGATGCTTTTGAGTTATTTAAAATAACAACTCTTAAATTAAAGACATTATTTGCATTAGACACAGAACATTCATAAATCATGTTCACTAAATTATTTCCATGTGTGTAATAGAAAGAACATGTATTATTATAATGATTTGGTGATCTGTTATGCACTCTTGAATTTGTTCCTAGTGGGAGAAACTAGAACTCCAACCCAGGTTGGTTATGTGATCAGGACAGGAAGCTGTTCAGGGCCACAGGTCATGGAGCAAGACGAATACTAGCTGTGACCTCTCTCACACTGTTTCAAGCTGTGGAGCTCTGAATGGGAGTGGCTCCATATAATCTTTGCATGTGACCATCTAGGACTTCTCTCATGGGATTGTCACATTTCTCATGTCAAAGTTAGCATTTCCCAAGTACAGATGTAAACTTTTAGAACCATTTTAAGGGTAGAAGTTTTTCATTATTTTACATTGAAATTTCTTCATAGTTCTTGATTTGGTTTTCTATCTCCAGTAATCCCTTCTATCATGAAATAGATTTCTATTAAGATATAACCCCGGTTCTTTGTTCAACTATACAAAGCAGATGCAGAAGGTAAGCTATGATGTAATACAAGAGGAAGACACTGTGAGTTAAGTGATTTCTCCAGAACTGATCTACCAGTGAATGGCAGAATAAAAACTTGACCTATTTGTACAGACTCATTTCAGGGCTGTGTTTTCAAACTCAGAACTCCCACACTCATGTTTGTGTAAAATCACATAAAAGGAAAGGGGCCTTAGAAACTAAACCACCATTCTAGTTCCTCATAACAATCCTGTAAGATAATGTTCTATGTGTTACATATCCATTCTCTGACAATTGTATTTTCATTATTGGAATGGAATTATTCGTTAACCATTGGAATTTATCCTTTCCCCTCATTTTTAAATAAGAAAAGCTATCATGCTTTATTCAAACTTGAAAAATGTATCACCCCCGTGTCAATTATTTATGGTCTGAGAGTAAAATTAGTTCCGAATTTTTTAAACGTTTTAGCAAAATTGACTATGAAGATTTTCTAAATTAAAAGAATCCATTAGTTAAATGTTCATCAAAGCACAGGGTCAAAAGTGCTACAGCTTTCTCAGAACTTTCTTCCCTTTTTATTTTCCCCTAAAAGCAAACTAGCAAGGTGGAGCTGAGCCTGCATCAGTCTTGCCTACACCTGCTCCCTTTGTGTGGGACACTGGCTTCAGGCTTCCTTGGCTTGAATGTGTTTGAGGAAAACTACACTTGTGTGCATGCAGCATTTCCTCCGTCGTCTTCCTAGTCTCCACTCTGGGGACATTGAATGTAGCTATGACCTTTGACTCGCCCCCTACACCCATCTTGCTGGCTAGCCCAATGTCATTACTTCCTACTGACTGCTACATGTGGCCTGCCTCTTTCCTGATACATTTTCCAGAATTTGGTGTCAATGTCATCAACCCCCCAAAATTACAAAGTAGTTTTTCTTTTCCTTTTTAAGCCCCTCAAAACATGGAAGTTGCAAAGGACTTGCTTCTCAACATTGGCTTTTGCCCAGGGAAGCATTCTGAACTTTGCTGTCTCTTAAGTCTTCCTTAGGAGGAAATCCGATAAAACCTGAGTTACAGACTTGTAAAGGCATTTACTGCTGAGAAAAAAAGCCTGTGGGAGTTCTCCTAATGGGGCATTGATGGACTCTAGTACTCCTTCAGGCCATAGAGACACCACAGTCACCACCAGTCTTCCTGCAAATAAAGCCAATGAACCAGAGAGTCCGACAAACTTCTTTAAGTGGCAGCTTTATGACAGGCAGTCTCTAATGCCCTGGGGACAGACTTGGTTTGTTTTAAAGACAATTATCTCTATAAACAAAGCTTCCTATTGAAAACAACATTTCCTTTTAGCAGCTATGTACTTTCTAGGAGTTGTTGTTTAGGAAAAAAATTCAATGCATCTTTTAAATTGCATTTCTACATGTCTATATTGAAAGAAAGTAAGAAAAATGTCTTTAAATCAAAGTTCCTTTCTGTCTTTCTTGGGCTAGGTGTTTCAGGAGTACGAGGAGATACTTCTAATGTGGGCTTTAATTGTAGAGTAAAAAGAACCTTTGGGAAACCAGACTTATCTGCTTTCTTTAATAATTTGTATGAAAGAAAAATGAAGCCCGTAGAGTACAAGGACTGTGTCTGGTTTCAATTTTGATTCTTCTATAAAAAGTCAATACTTCCTGTGAGCATTATCAGACAAAACAAATAAAGTATCAGAGACAATTATTTTATTAACTTGGAAAAATTGCAAACTGAAATTGAACATTTTTTCAGGTTTTGGCAAAATTAATGAATATTGGTCCTTTCCTCTCGCTGTATTTTAAAAGTATAATGTGACTCTTGAGGCCAATTTGAAGTCAGCATTGTTTTTCTTTAAATTCCAGTGTTTCCCCTTTTATTAAACTACTGGAAGACAAATGAAATTAACCAGCATCTGTTTCATGGCATCTAAGTTCTTTGTGCAAATACGACTGACAGAACAGAACAAACTAATTGCCATGAGCATGCATGGGTGTCCATTTTATTCCTAACAGAAGAATCCACTCTGTCTACTGAAGTTTGTTTATCTCTGTCTCCTTAGCCTCAGAACAGAGTTCTTATCATTTTTAAAAAGTTTTTAAAAATTAATTATTTTATTTATTTACATCCCAAATGTTGTGCCCTCCTGGTCTCCCCTCCCAGAGTTCTTCATCCACCCACCCTCCCCTTCACCTGTGAGAGGTGCCCCACACTCCACACATCCCCCTTCTCTGGAGAATCAAGTTTTTACAGAAAATTTGAGATAAAAGAATGTCTTGTGATAACGTATTGTATACAAAAATAATTAAAAATGCTTTTGAGCTATTCATTACTATATTTTATGAACAATTTGAATTCTTTGTATCAGTCCCATACTCAAAAGTGTCTCCTGGTATGGAGACCATTATTAATATATGATGTCCTGCCTCCTTCATTTAGATAATTTTACCTGATTATTATATTTTTCCTAATTTGTACATAGTTTTTTAATGTCACATTCATATGAATCTTCACCATTATTGCATAGCGAACTTATCTATGGAACTTTTTGAATATACTGCTTTTCAGGCCCACTGCAGACATTCACAATCATATGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTAAGTCATCTCTGTTCATAAATAGCGCACAGCTCTGTCTAGTACTCATTTCCAAGTAAAAGGAGCCATCAGAATTATTAATGATTAGTTATTGATGTGGGTATAAGAACTTAAAATTTTCTTTGCTAGATCCTAAAGCATTTAAGCTATATAGAAAGAGAAAGAGAGAAATAGGGTCAAAGAAGAGGAAAAAGGAGACAGGTACTTTCCCATTAAGACAGGTTGATGCTCAATCATAACACTGACCTCAAAGGGGGTTAGAGACAGTTTATTTGGCTTGGGATCCACAGACTTAGGTTACCCTAATTCTATGTTCCATCATGGAAGCAATGTTTCAAAGTTTTCTATAGTAACAGAAGAAAGAGGTTCGTAAGTCAAGACATATCAAACATGCATTAGTGGAAACATCAGTGAGCAGGATTAGAGCAAAATAGGAGAAGTCTGCTGTAGACCTGAGGTGCTGTCTGCATCGGTAGCCATTTCTTTCATTGGTGGAAACTAGGATTTTGTCAGTTTATGGATTCCAAGATGTTTTTACCTGTTAGTTATAGGACATTAGATGACACTGAAATGAGCAAAGAAAAATCCATCTGGGGAGCTAAAGATGGCTTCAAGATAAATTGTAATTAGGCCCTGGACCTCCAGCATTGCAAACTCCATTATCACCAAATCAGCTAATCAGCTTTGCAGAAGGTTCAGTTTGAAGGGAACACTCTGGGAATTCTTCACAGGCAAGCAGCAAAGACTGAGGAGGGAGTGGTCAGCGTCTTCATTTGTACAAACAGTTGGCTTTAAGTTTTCATTTCTTAATTAAGTTTTTGGGTTAAAATAACATTTGTTCCTCTAAGCAATGCTCAGGTTATCATAACACATTCATGTCTAAAAACTGGTTGAAGAAAGCTATTGATGTACACACATTACATTTCAGCCAAGTAAGGCCCTTGGATAATTAGATCATACAGAGTAGGAGGATACCTGTGCCCTCAAATAACTTGTCATCTTACAGAAGAAAAGCAGGAAGCAGAGAGTGACTGTGTACTGTGACAGATCCTCTCAGTAGGTTTTCCTTAAGTGCTGCTCCTGTATGAACACTCAAGCATCTCAGATAGTTGTCATTTTTATAACACTGAACACTTAACCGCTGATTTGCACATGGGGAAACTGAGTCTCTTAATTGAAGCAGAAAGTCCCACTGAAACTGTATGTCAAAGTGAGTATTCAAGTGTAGCGGAGATAAGGGGACTGGTTACTTAATCCAAGCCAAGCCGTTGTTCCCCACATCAGATATGTGGTGGTGTCTGATAAACTACCCAACAGTTTACTAATGTGGGAACCCACTTCCATTTCCCCCTTTTGGCCTATCTGTCAACTTATTGAGGAAGCAGTTGTTTCTGCTTCATCACACGTGGCCATTAGATGGTTTTCTCCCTCCCCCTACTTCTCCAATATCCATATTGCTTCCTTGTAGTCAAACTGCTCATTTAGAAAGTTTTCTAGGTGAGGTGCATGAAATTAAAATTTGGTTTCCAAAGGCAACTTGCAGTGTTTTTCTCTTCAGTTGCTTCCTCCTGAAAGGAAAAAAAATAAGTTTACAAAGCCAACTGTTTAGCAAGAAATGTTTAAATTTTTAGGAATTCCTTCAGAACTACATGCTGAGAGCAGGAGCAGGGGCTTTCTTTTTTGTAGGAATGGCTCTCATGTTTGTCCATTTTTTTTTTTTTTTGAGGTTCACCCGGGATCGATGCTCTTTCCCCTGGGGAAGCTGGGAGTTTATCCACACAACACTTTCAACAGCATGGAAATATGTGACCTAAGACTTAACACTTCATCATTCCCAGCCTCTCTGCTCACATTTAATATGGTTGCTGATTCTTTGTTTCAATGCTTCATAGCAAAAGGACTTGTCAAGTGGCTGTAGGGACAGCTCTGGCTTGTCTGAACTGAAAACTACAAGGGAAATCCCAGCGGTCCTCCTTGTCTTTCAAACAATTGGTGCAGTTGAAGAGTTTTAACTCCGAGTTTCGGCTCCCTATAACTTTTGATGCTGTGCATGCCTTGTGAAAGGAAAACTTTGGATTTCGTAGAATGTAGCACTTGCTCCTGTGAGATGCTGTAAAGTCTTTAGCACATCCTAAAATTTACAGATATTTTCTACTACTGAGTAGCTTTCAGCAAGTGTGGCCTGAGAGTCTTAGGGAAGCAAAAATGAGGACCTGGATTAAAACCCCAGAACCCACATAAAAACTATATATTGTGTCCAACACTTGTAATCCCATTACTGGAAGACTGAGCCAGGAGGCCAGCCATGCTATCCGATGGGCTCTCATTCAGTAAGAGATCCTGTCTCAAAAAGTAAGGCGAGAAGTGACAAAGGGAACACAATAAAGGAAGACCCCAAATGTCGAACTTAGGCCACCACATGCAGTTGCATGAGTGTGTGCAGACTCACACACACACACACACACACACACAAACCCAACAGAGGGAGTCACTGGAGTACTAATGTTTTATATTTTCCTTTAAATTTTGCAAATAATCTTCTGGAGAGTATGTATACAATATCATCCAGACAAATAATGTGCAATAAGTTAAAAAAAAAGAAAGAAGAAAGAAAAGATGAAAGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTGTGTGTGTGTAGCAAACTTAACTCCAGGCATTTGCTCTAACTACTAAGCTGAAACAAAATGGACTGTGATCTGTTAATATTGCAATAACAGACCTGGCCTGTGGCGATCTGATATCAACACTATTAATTGTTGAGAAGTGATTCGATTGGCAGAGGCAATGGAAAAAGATTAGAGCATTATTAGTAGTCACTGAGGACCGGCATATTTTAAAAACGAATTAGGGAGCATCAATTCATTTTCTTAGGTTGACTAATGGGAGAAAAGTTAAGTAAACTTCTGTTTAACGATAAAATTGATTTTAAGTTGGAAAAGAAAGAAATGTCAGTATTTTATCTCTTTTGAGAAAGTCAGGACTGCTGTAATTATTATAATACTTCCTTCACACTTTCAAATATAGATTAAGTCTTCGTTATAAATGCCCCCAATTAACCATGGTCCATTTCTTTGTAAAACAACCACGTATAATATATATCGTGTGCTCATAGGACCTAGCCTTTTAAACATTTGTATGTATAATTATGATTAAGGAGTTTGTCCAGATGAAGATTTGTATGGAATGTTCTCAAGCACAAGACACTGGCTGGAAGTGAACTCTTTTTTTTTCTTTTTTCTTTCCTTTCCTTTTCTTTTTTTCTTTCCTTTTCTTTTCTTTTTTTCTTTTCTTTTCTTTTTTCTCTTTCTATCTTTCTTTCTCTCTTTCTCTCTTTTCTTCTTTCTTTCTCTTTCTTTCTTTCCTTCTTCTTCTTCTTCTTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTTCTTCTTCTTCTTCCTCTTCCTCCTCTTCTTCCTCCTCCTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTCCTCCTCCTCCTCCTCCTCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCCTTCTTTTTTAACCAGAACACAGCTGTATGGCTGAGAAGCAACAAAATGTCCCACTACAATGACCACGTTTAGATGTCCCTTCTCTGACATTCTGTAACATTTGCTTCTTTTGCCTTCTGTTCTTTCCTTTCAGTGTCTGTAAACTTTGTTGTCCATTGCTCACCCTATGTCACCTCTTCAATCATCTTTGAGAATTCACAAAGACAGTACAGCTTCTTTTGCTAGGCAGCCCAAAACTGATTCAATAAGACAAATGGATAGACAAGGAACTAAATTGATCATCAAGTATTACCAAGGAAGAGCTTTCTGAGCAACTATCAAAGCCCCCAATTCTATATCAGTAATTTCTCAGTTTCTTTCTTGTTAATATCTTCAGTTAGGCATCAGTTTTGGTGGAGTACTTTTTGTCCCTCCCGCCCCAAAATGGAAGTACTTACTTTCATGACTCCAAAGAAAACAATCAGGTCCCAGTGAGCTTCAGATACAATGATGTCAGTTCATGTACTCCCTAGCCCTTGCTTGTCTGCCTTCTACCTCCAACCCCAAATCTTTGCCAATGAAAAATCTAAGTGATAATGCCTACTGTTTTCTAAGCTCAATTATTAAAATTAATTATGAACTCATTAAAGAATTGAATGATCTGAAAAAGTATAGTATAAAGGCATAGGATAGTCAAAATGTATAGCTGAATAATAACAGCAAATACATTAGTATTAAATAAGGTGTAGGATCCTGATACTATTCACTTAGGAATATTCCAATTATGTTTAAAATGTCAACTAACATTTTTAAAACTTTGTCAGGAGAAAATTTTGAATTGGGAATTGTTTTCTGCTCAATTATACTAACTAGATTAATTTAACCCAAGAATGTCACAGTAAACAGAGTTTACTATGTCAAAAATTAGATGGAAACTTCAATGGAGAAAAAGACAGGAGAAGAGTACTAGAATAAGTTAGTAATTACAATAAAGTGTAAAATGCAAGCAAAACTATGTTTGTTATTGTTTTTTAGAGAGTAGACATGGAACATGAAAAAGTTCCCTCTGGAGTAATGAGTATGTGTTCTATTCTTTCCCAG
Seq C2 exon
GGTTTTGGGAATCCCTCTGGTGAATATTGGCTTGGGAACGAGTTCATTTTTGCAATAACCAGTCAGAGGCAGTACATGCTGAGGATTGAGCTGATGGACTGGGAAGGGAACCGAGCCTACTCACAGTACGACAGATTCCACATAGGAAATGAAAAGCAGAACTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022309-Angpt1:NM_009640:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(15.3=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(25.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: