BtaINT0017855 @ bosTau6
Intron Retention
Gene
ENSBTAG00000039302 | ANGPTL6
Description
Bos taurus angiopoietin-like 6 (ANGPTL6), mRNA. [Source:RefSeq mRNA;Acc:NM_001128070]
Coordinates
chr7:15882694-15884598:-
Coord C1 exon
chr7:15883990-15884598
Coord A exon
chr7:15882872-15883989
Coord C2 exon
chr7:15882694-15882871
Length
1118 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
GACTTTCTTGGTTACCCCAGGTC
3' ss Score
7.01
Exon sequences
Seq C1 exon
CCTTCCCGTTCATTCTCTGCCCGCAGGTCCGCCATGTCGGCACCCCGGCTGCTCACGATGCAGCTGCTGCTCCTGTTGGGCGCGTGGTGGGCGCGCGCGGCCGCCCCGCGCTGCACCTACACCTTCGTGCTGCCCCCGCAGAAGTTCACAGGCGCCGTGTGCTGGAGCGGGCCAGCGGCCGCGCGGCCGACGCCGGAGGCCGTGAACGCCAGCGAGGTGGCGGCGCTGCGCGTGCGCGTGAGCCGCCACGAGGAATTGCTGCGCGAACTTCAGCGGCTGGCAACTGCCGACGGCGCCGTAGCCGGCGAAGTGCGTGCGCTGCGCAAGGAGAGCCGTGGTTTGAGCGCGCGCCTGGGCCAGCTGCGCGCGCAGCTGCAGCACGAGGCGGGCCCAGGGGCGGCGCCTAGCCCGGGGGCGGAGCCCGCCTCCGCGCTGGCGCTGCTCGGGGATCGCGTGCTGAACGCCTCCGCCGAGGCTCAGCGCGCCGCCGCCCGCTTCCACCAGCTGGACGTCAAGTTCCGCGAGCTGGCACAGCTAGTCAGCCAGCAGAGTGGCCTCATCGCCCGCCTGGAGCGCTTGTGCCCGGGGAGTGCGGGCGGGCAGCAGCAG
Seq A exon
GTAACTCCGAAACTATCACCCTCCCCAAATCGCAGCCACTTCTTGTGGGCATTGTAAGGTGGGGCCTCTTGAAATCCCACGATCTCTTATCTGCAGTTCTGAAGTAAAAAAGCTCCATAAACCGGATCCCTGCCTCTCCTCCAACAACTCATTTGGGTCAAAACGCTACTGGTAGCTACTTAAAGTGTTTATCTACCTGATATGAATACTCATAGTGGTGGTGGTTTAGTCGCTAAGTCGTGTCCGATTCTTGCGACCCCCACGGACTGTAGCCTGCCAGGCTCCTCTGTCCATGGGATTCTCCAGGCAAGAATACTGGAGTGGGTTGTCATTTCCTTCTTCAGGGGTTCTTCCTGACCCAGGAATTGAACCCAGCTCTCCTGCATTGCAGGCAGATTCCTGTAATCAGGTATATTATTAATATGTGCATGAAGACCAAAGACCTCATTGGGGTTGCTAGGGAATATATGTAGACCCTGTGTTACTGTTTCTTGTTGTCCTTTAGTCTAAGTCGTGTCTGACTCTCTGCAACCCCATGGACTGTAGCCTGCCAGGCTCCTGTGTCCATGGGGTTTCCCAGGCAAGAATATTGGGAGTGGGTTGCCATTTCCTTCTCCAGTTATTGTTTCTAACTCCTGCTGTATTATTCAGAATTCTGGACTATGTCTGGCCTTGGGTTTTGAATAAGAGATTATTGCTCTGACATTAGCTACCTTACAGCTTTGGGAGGCTTCAGTAAGTTAATACTCAAGTGTTGGATTGCCTCATATTATCCCTGCTTTACAGAAAAGTTTGGAGGCACAGATTGGTTAAGCTATGGGCACCAGAGCAAGAGTTTAAGCCCAGCTCTGTCTCTTGTTAAAATTTTTGGCCACACCTTGAGGCATGGGGGATCTTAGTTCTCCGACCAGGGACCGAACCCTTCCCCTTGCAGTAGAAGCAAAGTCACAACTGCTGGACCACCGGGAAGTCCAACTCTGTCTCTTCTTGACTGCTGGAGTTAGGCACGGGAGGATCAAGCCATGCTCCTTCTTGATCGCCTTCCCATCTGGGTGCTGGGAGATGTAGGAGCCCAGAGCCTCCAGGGCTAACGTATCTGACTTTCTTGGTTACCCCAG
Seq C2 exon
GTCCTGCCCCCACCCCTGGTACCTGTGGTTCCTGTAAGTTTGGTGGGTGGCACTGATGACACTGGCAGGAGGTTAAACTCAGCTGCAGAACCCCAGAGAGATCAGACCCTGAGACAGCCAGGACCCCTGGCCTCTCCTCTGCCCTTGGGGCACCCTGCTGTTCCTCCTAAGCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039302:ENSBTAT00000020787:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=NA C2=0.833
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGAGAGCCGTGGTTTGAG
R:
CTCCTGCCAGTGTCATCAGTG
Band lengths:
357-1475
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]