MmuINT0015037 @ mm10
Intron Retention
Gene
ENSMUSG00000038742 | Angptl6
Description
angiopoietin-like 6 [Source:MGI Symbol;Acc:MGI:1917976]
Coordinates
chr9:20876392-20878603:-
Coord C1 exon
chr9:20878049-20878603
Coord A exon
chr9:20876570-20878048
Coord C2 exon
chr9:20876392-20876569
Length
1479 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGCT
5' ss Score
6.52
3' ss Seq
GTCTGACTGTGTGGCCCCAGGTC
3' ss Score
8.42
Exon sequences
Seq C1 exon
GTGACGGCCATGGGGACCGCCAGGCTACGCAAGCTGCAACTGCTGCTTCTGCTGGGCGCTTGGAGGGCGCTCGGAGGTGCCGCGCGTTGCCGCGTCACCCTAGTTTTGTCCCCGCAGAAGGCAACTAGCGCCGTCTGCAGGAGCTCAGAAGCCACCCAAGACAGCGAACTGGCCACGCTGCGCATGCGCCTGGGTCGCCACGAGGAGCTGCTGCGCGCGCTGCAAAGGCGTGCGGCGGAGGGTGGTGCGCTCGCGGACGAGGTGCGCGCACTGCGCGAGCACAGTCTCACCCTGAACACGCGCCTGGGCCAGCTGCGCGCGCAATTGCAGCAGGAGGCGAGGGCGGAGCCTGACCTGGGGGCGGAGCCTGCTGCTGCACTTGGTTTGCTAGCCGAGCGCGCGCTGGACGCTGAGGCCGAAGCGCGCCGGACGACGGCACGCCTGCAGCAGCTGGACGCACAGCTCCGTGAGCATGCGCAGCTCATGAGCCAGCATAGCAGCCTCCTCGGCCGCCTGCAACGCGCGTGCGCGGGCCCGGAACGGGGACAGCAGCAG
Seq A exon
GTAGCTGTGCCGCGCGCTCCGTGTCAGGGGCACCACCCACTGCTCATCTGGGTGAATGATTGGGGAGAGCTTCATTGGCTGCACGAAAATATTCACAGCTCCTAGGCTTACAAGCACTTTCATCATACACAAGGACTTTTTTTTTTCTTTTTTTTAGTTTTACTAGACAGGGTTTCTCTGTGTAGTCGTTGCTGTCCTGGGACTCACTCTTTACACTAGGCTGACTTTGAACTCAGAGATCCACCTGCTTCTGTCGCCCAAGTGCTGAGATTAAAGGCGTGCGCCACCACACCAGGCTTGCATATCCTTTTAAGGATCTATTTTCATCTTAATGTGTGTGGACCGATGCATGTCTGATATGTGTTTGTGCACCATGTGTGTATAGAGTGTGTATACAGGCTAAAAATGATCTGGAACTGGAGTTACAGATGACTGTGAGCCACCTTGCTGGGAATTGAATCTGGGTTTTCTGGAAGAACAGGCAATGCTCTTAACCGCTGAGTCAGCTCTCCAGTCCCTAAGACAATATATTCTTGTAACTACATGGGACTTATGAATTTTGGGCAATTTCTGTCACCAGCCTTTTTGGTTTTGTTTGCTTGTTTTCTTTTTTCTTTTATTGAGATAGGGTCTCATGTAGCCCAGGCTAGGTTCTAGCATGTAGCTCAGGCTAGGTTCTAGCTCCTTGTGTAGTTGTGAATGACCTTGATTCTCATGTTCTGCCTCAGCGCAAATGACAGACATGGGACAACAAACAGCCAGGTTGGCTGGTTTTACATTCCTATTGATTTTGGGGTCCCTGGGACCTCCTATATGTGAGGTGGCTGTTCTGCTGCTGAGCCACATCCCCAGCATTGGGCCTGAATTTTGGCTTAGTGATGGTTCTGTGGATTTTCCTAACTCGTCTGGGGCCCACGTGCTCCTGCTCAGCAGTGAAGCTGTGATCAACAGCAGACTGGGAATCAGCTTGGCTTTCTCTGAGTAAAGCAAGCATGGGGTCACACACCTGCAGTCCCCGGCACAAAGAAGGCCGAGGCAGGAGGGTGTGACGGGTTCCAGGCTAGCCAGCTTGAGTGAGACAAGACACAGCTTGGCTGGGAGATGGCTCAGGGCCCAAGTCCCATCCCCAGCCCCATGGAAGCCTGGCCCTGCCTGCATGTGCTGTGCCTGGTCCAGTGCTGTGCTGGGAAGACAGGTTAACTGCGCTTGCTGGCCTCCAGGCCAACTCCAGCACAGTAAGAGACCCTGTCTCAAAGGAACAGGGAGCGTGGCAGAGCAGGACACCCAACACCCCCTTTTGCCCTCTGTGCTTTTCTTAGGATGGGTGATAAAGCTGAGACATTACCCTGCCTGATTTTCTGTTTATCTGGTAGGGGATTTGATCTATGGAACCTGCCTATCTCATTCCCTACGCCAGGGGATATCTGGCCTCTTTAGCTGAGGGAGTTAATGTAATCATGTCTGACTGTGTGGCCCCAG
Seq C2 exon
GTCCTGCCACTGCCCCTGGCGCCTCTGGTGCCTCTGAGCCTCGTGGGCAGTGCCAGCAACACCAGCAGGAGGCTGGACCAAACTCCAGAGCACCAGAGAGAGCAGAGCTTGAGACAGCAGGGGCCTCCATCTTCTCTGCTGCCCACAGGGCACCTTGCTGTCCCCACAAGGCCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038742:ENSMUST00000043726:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.354 A=NA C2=0.733
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGCACTTGGTTTGCTAG
R:
CTTGTGGGGACAGCAAGGTG
Band lengths:
355-1834
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types