RnoINT0017331 @ rn6
Intron Retention
Gene
ENSRNOG00000020603 | Angptl6
Description
angiopoietin-like 6 [Source:RGD Symbol;Acc:1311141]
Coordinates
chr8:21898093-21900708:-
Coord C1 exon
chr8:21900154-21900708
Coord A exon
chr8:21898271-21900153
Coord C2 exon
chr8:21898093-21898270
Length
1883 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGCT
5' ss Score
6.52
3' ss Seq
GTCTGACTGTATGACCTCAGGTC
3' ss Score
6.33
Exon sequences
Seq C1 exon
GTGGCGGCCATGGGGACTGCTGTGCTGCGCAAGCTGCAGCTGGTGCTCCTGCTGGGCGCTTGGAAGGCGCTTGGAGATGCCGCGCGGTGCCGCGTCACCCTTGTTCTGTCCCCGCAGATGGCGACTAGCGCGGTCTGCAGGAGCTCAGAAGCTTCCCAAGACAGCGAACTGGCCACGCTGCGCATGCGCCTGGGCCGTCACGAGGAGCTGCTGCGCGCGCTGCAAAGGCGTGCGGCCGAGGGTGGTGCGCTCGCGGGCGAGGTGCGCGCGCTGCGCGAGCACAGTCTCACCCTAAACACACGTCTGGGCCAGCTGCGCGCGCAACTGCAGCAGGAGGCGGGGGCGGAGCCTGATCTGGGGGCGGAGCCTGCTGCCGCGCTTGGTTTGCTAGCAGAGCGCGCGCTGGGTGCGGAGGCCGAAGCGCGCCGGACGACCGCGCGCCTGCAGCAGCTGGAGGAGCAGCTCCGTGAGCATGCGCAGCTCATGAGCCAGCATAGCAGCCTCCTCGGCCGCCTGCAACGCGCGTGCGCGAGCCCGGAACGGGGCCAGCAGCAG
Seq A exon
GTAGCTGTGCCCAGGATCTCAGATCCCAAATCCTCAACAGGGTGAATGGTTGGGAAGAGCCTCATCCGCTGCACGAAAATATTCACAGCATCTAGGCTTACATGCACTATTACCATACACAAGGACTTCAGGTTTTTTTTTTCTTTTTTTCACTAGACAGGGTTTCTCTGTGTAGTCCTTGCTGTCCGAGAACTCACTTTGTAGACCAGGCTGACCTAGAACTCAGAGATCCGCCTACCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGCACCACCACACTGGGCTTGCAAATCCTTTAAGGATTTATTTTCATCTTAATGTAGGTGGACCCATGTGTGTCTGCATGTGTGTCTGTGCACCACGTGTGTATACAGTGTGTATACAGGCCAAAAGTGATCTGGAACTAGAGTTACAGATGGCTGTTGAGTCACCTTGTGGGTGCTGGGAATTGAACGTGGGTCTTCCGGAAGAACAGCCAGTGCTCTTCGCCCCACCCTGTCCCCAGCTGAGGACAGAACCCAGGGCCTTGCACTTGCTAAATTCCCAACCCCCAGCCAATGCTCTTAACTGCTTGCTGAGTCAGCTCTCCAGTCCCTAAGACAATATATTCTTGTAACTACATGAGACTTCTGAATTACCAGCTATTTCTGTCACCAAGCCATTTTGGTTTTGTTTGCTTGTTTTTCATTTTTGTTTTTGTTTTTTTTTGTTTGTTTGTTTGTTTTGAGGTGGGGTTTCTCTGCGCAGCCACGGCTGTCTTGGAACTCACTCTGTAGACCAGACTGGCCTTGACTTTACAGAGATCTGCCTGTGTCTACTTCCTGACTGCTGGAATTAAAGGCATGTGCCCCCACTTCCTGACTTCTTTTCTTTTTCTTTTTTAGTTGAGATAGGGTGTCATGTAGCCCAGGCTGGGTTCTAGCTTCTTGTGTAGCTGAGGATGACCTTGATTCTCACGTTCTGCCTCCTCGGTGCAAGTGACAGACATGGGACAAGAAGCTTGGTCAGCTGGTTTTTCGTTCCGATTGGTTTAGGGGTCCCTTGAATTTCCTGTATGACATAACTGCCCTACTGCTGAACCACATCCCCAACATTGGGCCTGAATTCTGGATTGATGATGGATCTGTAGATTTTTCCTAAATTGTCCAAGGTCCCTGTGCTCAGCAGTGAAGCTGTGATCAATAGCACACTGGGAGTTGGCCCAGCATTCTCTGAGCTCAAAAGCACAGAGCAAAGGAAGCGTGGTGTCACGCAATGACACAGTCCCCAGCTTGCAGGAGGCAGAGGCAGGAGTGTCTTTCAAGTTCCAGGCTAGCCAGTTGGTGTGAGACCCCCCTTGTTTCTCAAACAAAAAGTGACAAGAAGATAAGGCTGGGCAGGGAGGTGGCTCAGGTTGGAAGAGTGCTTGCTTTGCAAGCCTGAAGACCTAAGTTCCATCCCCAGCACCATGGAGGCCCCGGGCCTGCGTGCATGCGCTCTGTGTCTGCTCCAGTGCTGTGCTGGGCAGACGGGGTGACTGGGGCTTACAGCACAGTAAGACACCCAGTCTTTTTTTTTTTTTTTTTTGGTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGCAAGCGCTCTGCCACTGAGCTAAATCCCCAGCCCCAAGACACCCAGTCTTAAGGGAGCAGGAAGGGTGGCAGGGCATCCTTTGCCCTCTGTGCTTCTCTTAGGACGGGGTGACAAAGCTGGGACATTGCTTTGCCTGATTTTCTGTTTATCTGGTAGGGGATTTGATCTACGGATCCTGCCTATCCCCCTGTCTGTGTCAGGGGAGGTCTGGCCTCCTTAGCTGAGGGGTTAATGTAATTATGTCTGACTGTATGACCTCAG
Seq C2 exon
GTCCTGCCACTGCCCCTGGTGCCTTTGGTTCCTCTGAGTCTAGTGGGAAGTGCCAGCAACACCAGCCGGAGGCTGGACCAAATTCCAGAGCACCAGAGAGAGCAGAGCTTGAGACAGCAGGGGCCTCCATCTTCTCCGCTGCCCACAGGGCACGTTGCTGTCCCCACCAGGCCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020603:ENSRNOT00000027963:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.297 A=NA C2=0.683
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAAACACACGTCTGGGCCAG
R:
GGTGCTCTGGAATTTGGTCCA
Band lengths:
358-2241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]