MmuINT0015037 @ mm9
Intron Retention
Gene
ENSMUSG00000038742 | Angptl6
Description
angiopoietin-like 6 [Source:MGI Symbol;Acc:MGI:1917976]
Coordinates
chr9:20680836-20683047:-
Coord C1 exon
chr9:20682493-20683047
Coord A exon
chr9:20681014-20682492
Coord C2 exon
chr9:20680836-20681013
Length
1479 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGCT
5' ss Score
6.52
3' ss Seq
GTCTGACTGTGTGGCCCCAGGTC
3' ss Score
8.42
Exon sequences
Seq C1 exon
GTGACGGCCATGGGGACCGCCAGGCTACGCAAGCTGCAACTGCTGCTTCTGCTGGGCGCTTGGAGGGCGCTCGGAGGTGCCGCGCGTTGCCGCGTCACCCTAGTTTTGTCCCCGCAGAAGGCAACTAGCGCCGTCTGCAGGAGCTCAGAAGCCACCCAAGACAGCGAACTGGCCACGCTGCGCATGCGCCTGGGTCGCCACGAGGAGCTGCTGCGCGCGCTGCAAAGGCGTGCGGCGGAGGGTGGTGCGCTCGCGGACGAGGTGCGCGCACTGCGCGAGCACAGTCTCACCCTGAACACGCGCCTGGGCCAGCTGCGCGCGCAATTGCAGCAGGAGGCGAGGGCGGAGCCTGACCTGGGGGCGGAGCCTGCTGCTGCACTTGGTTTGCTAGCCGAGCGCGCGCTGGACGCTGAGGCCGAAGCGCGCCGGACGACGGCACGCCTGCAGCAGCTGGACGCACAGCTCCGTGAGCATGCGCAGCTCATGAGCCAGCATAGCAGCCTCCTCGGCCGCCTGCAACGCGCGTGCGCGGGCCCGGAACGGGGACAGCAGCAG
Seq A exon
GTAGCTGTGCCGCGCGCTCCGTGTCAGGGGCACCACCCACTGCTCATCTGGGTGAATGATTGGGGAGAGCTTCATTGGCTGCACGAAAATATTCACAGCTCCTAGGCTTACAAGCACTTTCATCATACACAAGGACTTTTTTTTTTCTTTTTTTTAGTTTTACTAGACAGGGTTTCTCTGTGTAGTCGTTGCTGTCCTGGGACTCACTCTTTACACTAGGCTGACTTTGAACTCAGAGATCCACCTGCTTCTGTCGCCCAAGTGCTGAGATTAAAGGCGTGCGCCACCACACCAGGCTTGCATATCCTTTTAAGGATCTATTTTCATCTTAATGTGTGTGGACCGATGCATGTCTGATATGTGTTTGTGCACCATGTGTGTATAGAGTGTGTATACAGGCTAAAAATGATCTGGAACTGGAGTTACAGATGACTGTGAGCCACCTTGCTGGGAATTGAATCTGGGTTTTCTGGAAGAACAGGCAATGCTCTTAACCGCTGAGTCAGCTCTCCAGTCCCTAAGACAATATATTCTTGTAACTACATGGGACTTATGAATTTTGGGCAATTTCTGTCACCAGCCTTTTTGGTTTTGTTTGCTTGTTTTCTTTTTTCTTTTATTGAGATAGGGTCTCATGTAGCCCAGGCTAGGTTCTAGCATGTAGCTCAGGCTAGGTTCTAGCTCCTTGTGTAGTTGTGAATGACCTTGATTCTCATGTTCTGCCTCAGCGCAAATGACAGACATGGGACAACAAACAGCCAGGTTGGCTGGTTTTACATTCCTATTGATTTTGGGGTCCCTGGGACCTCCTATATGTGAGGTGGCTGTTCTGCTGCTGAGCCACATCCCCAGCATTGGGCCTGAATTTTGGCTTAGTGATGGTTCTGTGGATTTTCCTAACTCGTCTGGGGCCCACGTGCTCCTGCTCAGCAGTGAAGCTGTGATCAACAGCAGACTGGGAATCAGCTTGGCTTTCTCTGAGTAAAGCAAGCATGGGGTCACACACCTGCAGTCCCCGGCACAAAGAAGGCCGAGGCAGGAGGGTGTGACGGGTTCCAGGCTAGCCAGCTTGAGTGAGACAAGACACAGCTTGGCTGGGAGATGGCTCAGGGCCCAAGTCCCATCCCCAGCCCCATGGAAGCCTGGCCCTGCCTGCATGTGCTGTGCCTGGTCCAGTGCTGTGCTGGGAAGACAGGTTAACTGCGCTTGCTGGCCTCCAGGCCAACTCCAGCACAGTAAGAGACCCTGTCTCAAAGGAACAGGGAGCGTGGCAGAGCAGGACACCCAACACCCCCTTTTGCCCTCTGTGCTTTTCTTAGGATGGGTGATAAAGCTGAGACATTACCCTGCCTGATTTTCTGTTTATCTGGTAGGGGATTTGATCTATGGAACCTGCCTATCTCATTCCCTACGCCAGGGGATATCTGGCCTCTTTAGCTGAGGGAGTTAATGTAATCATGTCTGACTGTGTGGCCCCAG
Seq C2 exon
GTCCTGCCACTGCCCCTGGCGCCTCTGGTGCCTCTGAGCCTCGTGGGCAGTGCCAGCAACACCAGCAGGAGGCTGGACCAAACTCCAGAGCACCAGAGAGAGCAGAGCTTGAGACAGCAGGGGCCTCCATCTTCTCTGCTGCCCACAGGGCACCTTGCTGTCCCCACAAGGCCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038742-Angptl6:NM_145154:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.341 A=NA C2=0.733
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGCACTTGGTTTGCTAG
R:
CTTGTGGGGACAGCAAGGTG
Band lengths:
355-1834
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: