HsaINT0008022 @ hg38
Intron Retention
Gene
ENSG00000130812 | ANGPTL6
Description
angiopoietin like 6 [Source:HGNC Symbol;Acc:HGNC:23140]
Coordinates
chr19:10094758-10096573:-
Coord C1 exon
chr19:10095982-10096573
Coord A exon
chr19:10094939-10095981
Coord C2 exon
chr19:10094758-10094938
Length
1043 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
GACTTTCTCCGTCACCCCAGGTC
3' ss Score
8.55
Exon sequences
Seq C1 exon
GTCCGCCGCGATGGGGAAGCCCTGGCTGCGTGCGCTACAGCTGCTGCTCCTGCTGGGCGCGTCGTGGGCGCGGGCGGGCGCCCCGCGCTGCACCTACACCTTCGTGCTGCCCCCGCAGAAGTTCACGGGCGCTGTGTGCTGGAGCGGCCCCGCATCCACGCGGGCGACGCCCGAGGCCGCCAACGCCAGCGAGCTGGCGGCGCTGCGCATGCGCGTCGGCCGCCACGAGGAGCTGTTACGCGAGCTGCAGAGGCTGGCGGCGGCCGACGGCGCCGTGGCCGGCGAGGTGCGCGCGCTGCGCAAGGAGAGCCGCGGCCTGAGCGCGCGCCTGGGCCAGTTGCGCGCGCAGCTGCAGCACGAGGCGGGGCCCGGGGCGGGCCCGGGGGCGGATCTGGGGGCGGAGCCTGCCGCGGCGCTGGCGCTGCTCGGGGAGCGCGTGCTCAACGCGTCCGCCGAGGCTCAGCGCGCAGCCGCCCGGTTCCACCAGCTGGACGTCAAGTTCCGCGAGCTGGCGCAGCTCGTCACCCAGCAGAGCAGTCTCATCGCCCGCCTGGAGCGCCTGTGCCCGGGAGGCGCGGGCGGGCAGCAGCAG
Seq A exon
GTAACCTCGCAGCCTCCCCGGAGAGCAGCATCGTCTGTGAAATGGGGGTTTTGCAACCCCACGATCTCTTATCCACAGTTCTGAAATCCGCAAAACCCTGAAAACCGGATTCCTACTCGCCCCTTCTGGTAACTTATTTGGGTCAAAAAGTGACTGGTGGCTATTTATAGCCTTCACTTAACCACTTAATGTGAATAGTCATAGGATCCTATAATTAAACATATCATTATCACGTAAAGACCAAAAACCCCTTTAGGAGTGTTATGTATATTCTATACACACATGCATATACATAACCCTCCCTGTGTCACTGTGTCTAAATCCAGCCGTGTTATTCTGAATTCTGGAACGTGTCCTGGTCTGGGTTTGGGATAAGAGAATGTTGCTCTGTGACAGTCCCTACGTTACAGGGTTGGTGAGAGGAGTCAGTAAGTTAGATACTGTTGGATGTGTTGTTATTATCCCTACTCTACAGAGGAGGCTGGGGCACAGATCAATTAAACCATGAGCACCAAGAGCCGGTATTTAAGCCCAGCTCTGTCTGCACTTTATTTTTTTAATTTTATTTTTGAGATGGAGTCTCGCTCTGTCTCCCAGGCTGGAGTGCAGTGGTGCAATCTTGGCTCACTGCAACCTCCACCTCCCAGGTTCAAGCGATCCTCCTACCTCAACCTTCCGAGTAGCTGGCATTACAGGCGTGAGCCAACACACTCAGTTAATTTTTTTTGTATTTTTAGTAGAGACGGAGGTTTCACCATGTTGGTCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCACGGGCCATAGCGCCCAGCCTGTCTGCACTTTAAAGCCAAGTTGTTTAGCTTTTGGGGAGGATCATTCCTAGGGCTGGGACACCCCCACTGCCAGATGTCCAGGTCATTTGGGAGCTGGGAGATTTATCCACCATTTCTGCCCCTGAGACCAGGCCTCCTGGCCTGAGGGTTAGTGCAATTACACCTGACTTTCTCCGTCACCCCAG
Seq C2 exon
GTCCTGCCGCCACCCCCACTGGTGCCTGTGGTTCCGGTCCGTCTTGTGGGTAGCACCAGTGACACCAGTAGGATGCTGGACCCAGCCCCAGAGCCCCAGAGAGACCAGACCCAGAGACAGCAGGAGCCCATGGCTTCTCCCATGCCTGCAGGTCACCCTGCGGTCCCCACCAAGCCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130812:ENST00000253109:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=NA C2=0.880
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTTACGCGAGCTGCAGAG
R:
CACAGGCACCAGTGGGGG
Band lengths:
390-1433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development