BtaINT0020563 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004190 | ARHGAP29
Description
Bos taurus Rho GTPase activating protein 29 (ARHGAP29), mRNA. [Source:RefSeq mRNA;Acc:NM_001102485]
Coordinates
chr3:49455577-49456327:+
Coord C1 exon
chr3:49455577-49455734
Coord A exon
chr3:49455735-49456190
Coord C2 exon
chr3:49456191-49456327
Length
456 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
3' ss Seq
TTGTATTTGGGTTTTCTTAGGAA
3' ss Score
7.95
Exon sequences
Seq C1 exon
GTAACAGTTAACCTCTTCCAGATGCAGCAGCTGCAGGCTGCCTCCCTCTCAAGCAACTTACAATCTCTCTGTGATAGTGCCAAACTCTATGACCCAGGCCAAGAGTACAGTGAGTTTGTCAGGGCCACAAATTCAGCTGAAGAGGAGAAAGTTGATGG
Seq A exon
GTGAGAACATATAGAAGAAATTATTTCTAGATATAAAATCTTTATTGCCGAGTTTTCTATCTTGTGTCAGGTGGTGTCGTTTCTAACACTGACAGCATTGACTGTAAAACTTTCTGAATTTTTAAAAATATTTAAGATGTAATTGACTTAGAGTAAAGCTTTCCATTTTGACACAGAGCTCAGTTATTTGAGATTTAGAAATCCACTATACTTGAAAAGTTTAACCATGCTATGAATAATTCACTATATTTTTGCTCCTCTTTTTCAAGTTTCAACTGTAATAAATAAAAATGATTAATAAGTTTTATTCACATATCTTTTAAGAAGTTCAACTATATGTTTCTTAATATTTAGTTTAATTACTCTGTTCATTAAATTAACAAATATTTCTGAAAATAAAGTGGGCTGATTATTTGTCATTTTTCTGTATGAAGAGTTGTATTTGGGTTTTCTTAG
Seq C2 exon
GAATGTAAATAAACAATTAAGCAGTCCTCCCATTTCTGGATACGGACCTTCTGACTCTTTAGAAGACGTTGTACGCCTTCCTGACAGCTCTAATAAGATGGAAGAGGACAGATGCTCTAACAGTGCAGACATAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004190:ENSBTAT00000005488:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.302 A=NA C2=0.915
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAACAGTTAACCTCTTCCAGATGCA
R:
TGTTATGTCTGCACTGTTAGAGCA
Band lengths:
294-750
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]