GgaINT0037542 @ galGal3
Intron Retention
Gene
ENSGALG00000005683 | ARHGAP29
Description
NA
Coordinates
chr8:14334181-14336299:+
Coord C1 exon
chr8:14334181-14334314
Coord A exon
chr8:14334315-14336132
Coord C2 exon
chr8:14336133-14336299
Length
1818 bp
Sequences
Splice sites
5' ss Seq
AAAGGAAGC
5' ss Score
-0.34
3' ss Seq
TTACTTTCTTCTTTTTGAAGGGT
3' ss Score
9.24
Exon sequences
Seq C1 exon
GTAACAGTTAACCTGTTCCAGCTGCAGCATGCACAGGTTGTATCTCTTCCAGTAAACTGCCAGTCACTCTGTGAGAGTGCCAAACTTTATGACCCTGGTCAGCAGTATTCAGAGTTTGTGAAAAGTTTGCCAAA
Seq A exon
GGAAGCTGTTCGTATTGAACGAGGTTCTTTTGAAACCCAAAGCTCCCAGATCGATGGGTGAGTCTCAAACTAATGGTAGTATTTGTTTGCTTTAGAATTAAATGTAAGAGATAGATGTTTAGCAGTGAAATAGAACTTTTGGAAGAATATAACAAGTCCTGGTGCTTTACCATATTTTAACATTCTTTCTTTTACACATTTTTGCTAGTTGATTACTATGTATTATGTTGACATTGAAATCTGACTTAAATTCCAAAGCAGTGTCACTTTGCGTATTAAGACATGCAAAAACATTAACAATTGCTGTGTAAGGATTCACTTCTTACTGCTTTAACATAGAAGCTAGTTAGTATTAAAAAAAAAAAAAAGCCAACAACTTCTGAACTCTGGTGCTTACTGGTGTGGCAGTAGTATTTGATATTCAGTTTTTGAAAAACCTGAGGTTGTTCTTTTGACTGCCTTGCTGTTACTGTACATGTTTAGGTTTTGAAAGTGTTGGGAAGGAAGCTGTGTTGAATTTTTGTCTCATGCAATAAAAATTTAAAAGTATTTTTCCAAACAGTGTGAAATGGTAGCTTTTACTGTTAATCTATTAAAGGCATAGCTAATAATAAAATAATAAAAATAAGACAAAAGGATTTGTGTCAGTATTTGAAGTGCTTTGTCTACCTTGAACTTGTAAAATAGTCATCCTGGCACTGAAGTGTGAGAGTATCCATTCCAATCTGTATGTTTTAGGTTCTACAGGAAAGTGCTGTATTCTTGTCAGAAGAAAGCTAAATACAAAAACCTAATAATTGAGTCAGACTTGTACCAACAAAAGCCAGGAAATGCTGAGTTAAAGCAGGGATTCTTTGTCCTTGTCTCTCAACTTCCTACCTTTTAAGACTGATTTAGACTGTATTCATAAACTGTAACCTGAGGGATTTAACTGTGCAACTCCCCAAGAAAGTGTTAAGTATGAAATTTCTAACTTTTTAATACTCTCCTAGCTATTTACTGCCTAAGAATCATACCAGATCTTTCTCCTCTCCCCGCCGCCCCCCTCCTCCCCCTCCCCCACCCCCCCCTTTGTTTTCTTTGACATGGCCTTGTGATTCTTTGGGAACTCTGCATTTATTTAAGTGATAGTAGCTTGGGCAAATGCATGTTTTAATGTTTTCCAGTCTATTTCCTTCTGCTGGATTGGGTAGAATTCATTAAGCAACGGTACTTGGTTAGTAGGCCTTTTTGTCGATGGAGTACTTTACATTGATTAGACTTAATTGTTTCCTGTCCACATCTTGAGAGCAGATTTTTACAGTGGATTTAGGTCTCTGTCAGGTTCAACATATTTACTGGGTTTTTTTTCTGTTTTGCCTGGTGTTTCCTTTTTTCCTGTTGCTGTTGTTGCTCTTGCTTTTCAGGCAGAAAAGTAGATCCTGCAGCAGTACCTGGCAAAATTTTAGCATCTATATGTTTATTTGTGAATAGTGGGTAATGGCAGGGCAGAGAATCTTTCAGAGGAAAGTGTGAGAAAAGGATGGAATAGCTACTATATTCTGGTCTTTCAATGGATTTGCTGTATTTTCAAAATCTGAAAGATAAGCCATTAAACCTTGCAGAGATCTGAAAGAGCTGATTTACATGAAAGAAATGTATATACTTAAAGCAGTATGGCAATTTATCTTTAATTATAGTTTCAGCTTTATTAATGACAGGGCAAATACAAATGTTCATGAACAGCAATGAAATGAAAGATGTTTAGTGCATTGGGATGGAAAAAAATCATTTAATTCTATATTATTCATGCTTCTAATTACTTTCTTCTTTTTGAAG
Seq C2 exon
GGTTTTTAATAAGCAATCAGCCAACAGTATCCATACATCACATGGTAACTTATCTCAGTGTTCAGGAGACTTTCCAACCCAGATGCTAGATGATGTGGGAAGTCCAGTCTATCATCGTTCCCAAAGAATTGGCGAGAAGAGATCTTCCAGCAGCACAGATATCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005683:ENSGALT00000009113:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.667
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAACCTGTTCCAGCTGCAGC
R:
CTTGGATATCTGTGCTGCTGGA
Band lengths:
294-2112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]