HsaINT0011484 @ hg19
Intron Retention
Gene
ENSG00000137962 | ARHGAP29
Description
Rho GTPase activating protein 29 [Source:HGNC Symbol;Acc:30207]
Coordinates
chr1:94654772-94655639:-
Coord C1 exon
chr1:94655482-94655639
Coord A exon
chr1:94654909-94655481
Coord C2 exon
chr1:94654772-94654908
Length
573 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
3' ss Seq
TGTCATTGTTGTTGTTTCAGAAA
3' ss Score
8.95
Exon sequences
Seq C1 exon
GTAACAGTTAACCTCTTCCACATGCAGCATCTGCAGGCTGCTTCCCTTGCAGACAGTTTACAGTCTCTCTGTGATAGTGCCAAACTCTATGACCCAGGCCAAGAGTACAGTGAATTTGTCAAGGCCACAAATTCAACTGAAGAAGAAAAAGTTGATGG
Seq A exon
GTGAGAATTAATGTACAGACAAAATTATTTCAAAATATAAAACACTTAATTGTTAAGTTTCTATCTAGTACAAGGAGGAGACTTTTCTAACTGACAAAATTAAAAATTTTCTGAGTTCTTTAAATATTATTTTATGGTATCGAAGTAGATATATTTAAAGAATAGATGTAATTCATTAACAGTGAGCCTTTCCATTTTGACACAGACTTCTTTTATTTAAGAATTAAAAATCCTTTGGGAATGGCATATGATGGCCATACATGTTTTGAAGGTCGACAAAAATTTAACCTATGTTTTTCACAGAGGTCATGCTAGAAAAGTTTAACCATGACATGAATTAACTATACTTTTGCTATTCACTTCCCATGTTTTCACTGTAATAAGGACAAATAATTAAAAAGTATTTACATCTCCTATAAGAAGCTGAACCATGAGTGTGGTTTGTTTTTAATATTTAGTTTAATTCTTCTATGATTGTTAAATTAATAGATTTTTCTAAACATAGAATGAAATCAACTGATTATTATTCTTTGGAGTGTTGAGTTTTGTTTTTTGTCATTGTTGTTGTTTCAG
Seq C2 exon
AAATGTAAATAAACATTTAAATAGTTCCCAACCTTCAGGATTTGGACCTGCCAACTCTTTAGAGGATGTTGTACGCCTTCCTGACAGTTCTAATAAAATTGAAGAGGACAGATGCTCTAACAGTGCAGATATAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137962-ARHGAP29:NM_004815:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.302 A=NA C2=0.894
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAACAGTTAACCTCTTCCACATGCA
R:
CTGTTATATCTGCACTGTTAGAGCA
Band lengths:
294-867
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)