RnoINT0020069 @ rn6
Intron Retention
Gene
ENSRNOG00000012563 | Arhgap29
Description
Rho GTPase activating protein 29 [Source:RGD Symbol;Acc:1306185]
Coordinates
chr2:225599586-225600484:+
Coord C1 exon
chr2:225599586-225599746
Coord A exon
chr2:225599747-225600344
Coord C2 exon
chr2:225600345-225600484
Length
598 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGA
5' ss Score
9.84
3' ss Seq
ACTTTATCTTTACCTCACAGGAA
3' ss Score
10.21
Exon sequences
Seq C1 exon
GTAACAGTTAACCTCTTTCATATGCAGCAGCTTCAGGCTGCTTCCCTCGCCAACAGTTTACAGTCCCTCTGTGACAGTGCCAAACTCTATGATCCAGGTCAGGAGTATAGTGAATTCGTGAAGGCTACAAGCTCAAGTGAATTAGAAGAAAAGGTTGACGG
Seq A exon
GTAAGAATTGATGCATAGGAGAAATTGTTTCAAGTGAGAGAACATTTACTGAGTTCCTGTCTATGCTTATAAGGAAGTGTCTTTTCTTATACTGAATTAACTTTAATTTTTTCATTATTCATATTTTGTGAACTTAAGGAATGTAGATGCAACATACTTAAGAATGATGCTTTTTGGGGCTGGGGATTTAGCTCAGTGGTAGAGCGCTTACCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAAAAGAACCAAAAAAAAAAAAAAAAAAGAATGATGCTTTTTATTTTCACACAGACCTCACCTCTTTGAGTTTTAAAAACCCTTTGGGAATAGCAAATTATGACCTACATATTTTGAGTATACCAAAAACTTAACCTATATTTTCTACTAATGTTAGATTAGAAAAGTTTAATCATGACATAAATATTCTATTGTCATACCTCTTCCATATTTCAACTATTATTTAAATCTTTAGAAGAAGTTGAACTGCGTAATAGTTATTAATATTCATTAAGCTTGTTCTGCATTCATTAAATTAAGAATTTAAAAAAACTTAGTGCTGAACTTTATCTTTACCTCACAG
Seq C2 exon
GAATGTAAACAAACAAATAGCCAGCAGTCCGCAGACATCTGGATATGAACCTGCTGACTCTTTAGAGGATGTTGCACGCCTCCCTGACAGCTGTCACAAACTTGAAGAGGACAGGTGTTCCAACAGTGCAGACATGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012563:ENSRNOT00000017076:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.222 A=NA C2=0.833
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAACCTCTTTCATATGCAGCAGCT
R:
CTGTCATGTCTGCACTGTTGGA
Band lengths:
294-892
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]