GgaINT0037542 @ galGal4
Intron Retention
Gene
ENSGALG00000005683 | ARHGAP29
Description
rho GTPase-activating protein 29 [Source:RefSeq peptide;Acc:NP_001231811]
Coordinates
chr8:12584748-12586866:+
Coord C1 exon
chr8:12584748-12584938
Coord A exon
chr8:12584939-12586699
Coord C2 exon
chr8:12586700-12586866
Length
1761 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TTACTTTCTTCTTTTTGAAGGGT
3' ss Score
9.24
Exon sequences
Seq C1 exon
GTAACAGTTAACCTGTTCCAGCTGCAGCATGCACAGGTTGTATCTCTTCCAGTAAACTGCCAGTCACTCTGTGAGAGTGCCAAACTTTATGACCCTGGTCAGCAGTATTCAGAGTTTGTGAAAAGTTTGCCAAAGGAAGCTGTTCGTATTGAACGAGGTTCTTTTGAAACCCAAAGCTCCCAGATCGATGG
Seq A exon
GTGAGTCTCAAACTAATGGTAGTATTTGTTTGCTTTAGAATTAAATGTAAGAGATAGATGTTTAGCAGTGAAATAGAACTTTTGGAAGAATATAACAAGTCCTGGTGCTTTACCATATTTTAACATTCTTTCTTTTACACATTTTTGCTAGTTGATTACTATGTATTATGTTGACATTGAAATCTGACTTAAATTCCAAAGCAGTGTCACTTTGCGTATTAAGACATGCAAAAACATTAACAATTGCTGTGTAAGGATTCACTTCTTACTGCTTTAACATAGAAGCTAGTTAGTATTAAAAAAAAAAAAAAGCCAACAACTTCTGAACTCTGGTGCTTACTGGTGTGGCAGTAGTATTTGATATTCAGTTTTTGAAAAACCTGAGGTTGTTCTTTTGACTGCCTTGCTGTTACTGTACATGTTTAGGTTTTGAAAGTGTTGGGAAGGAAGCTGTGTTGAATTTTTGTCTCATGCAATAAAAATTTAAAAGTATTTTTCCAAACAGTGTGAAATGGTAGCTTTTACTGTTAATCTATTAAAGGCATAGCTAATAATAAAATAATAAAAATAAGACAAAAGGATTTGTGTCAGTATTTGAAGTGCTTTGTCTACCTTGAACTTGTAAAATAGTCATCCTGGCACTGAAGTGTGAGAGTATCCATTCCAATCTGTATGTTTTAGGTTCTACAGGAAAGTGCTGTATTCTTGTCAGAAGAAAGCTAAATACAAAAACCTAATAATTGAGTCAGACTTGTACCAACAAAAGCCAGGAAATGCTGAGTTAAAGCAGGGATTCTTTGTCCTTGTCTCTCAACTTCCTACCTTTTAAGACTGATTTAGACTGTATTCATAAACTGTAACCTGAGGGATTTAACTGTGCAACTCCCCAAGAAAGTGTTAAGTATGAAATTTCTAACTTTTTAATACTCTCCTAGCTATTTACTGCCTAAGAATCATACCAGATCTTTCTCCTCTCCCCGCCGCCCCCCTCCTCCCCCTCCCCCACCCCCCCCTTTGTTTTCTTTGACATGGCCTTGTGATTCTTTGGGAACTCTGCATTTATTTAAGTGATAGTAGCTTGGGCAAATGCATGTTTTAATGTTTTCCAGTCTATTTCCTTCTGCTGGATTGGGTAGAATTCATTAAGCAACGGTACTTGGTTAGTAGGCCTTTTTGTCGATGGAGTACTTTACATTGATTAGACTTAATTGTTTCCTGTCCACATCTTGAGAGCAGATTTTTACAGTGGATTTAGGTCTCTGTCAGGTTCAACATATTTACTGGGTTTTTTTTCTGTTTTGCCTGGTGTTTCCTTTTTTCCTGTTGCTGTTGTTGCTCTTGCTTTTCAGGCAGAAAAGTAGATCCTGCAGCAGTACCTGGCAAAATTTTAGCATCTATATGTTTATTTGTGAATAGTGGGTAATGGCAGGGCAGAGAATCTTTCAGAGGAAAGTGTGAGAAAAGGATGGAATAGCTACTATATTCTGGTCTTTCAATGGATTTGCTGTATTTTCAAAATCTGAAAGATAAGCCATTAAACCTTGCAGAGATCTGAAAGAGCTGATTTACATGAAAGAAATGTATATACTTAAAGCAGTATGGCAATTTATCTTTAATTATAGTTTCAGCTTTATTAATGACAGGGCAAATACAAATGTTCATGAACAGCAATGAAATGAAAGATGTTTAGTGCATTGGGATGGAAAAAAATCATTTAATTCTATATTATTCATGCTTCTAATTACTTTCTTCTTTTTGAAG
Seq C2 exon
GGTTTTTAATAAGCAATCAGCCAACAGTATCCATACATCACATGGTAACTTATCTCAGTGTTCAGGAGACTTTCCAACCCAGATGCTAGATGATGTGGGAAGTCCAGTCTATCATCGTTCCCAAAGAATTGGCGAGAAGAGATCTTCCAGCAGCACAGATATCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005683:ENSGALT00000009113:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.052 A=NA C2=0.807
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAACCTGTTCCAGCTGCAGC
R:
TCTGTGCTGCTGGAAGATCTCT
Band lengths:
343-2104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]