MmuINT0018090 @ mm9
Intron Retention
Gene
ENSMUSG00000039831 | Arhgap29
Description
Rho GTPase activating protein 29 [Source:MGI Symbol;Acc:MGI:2443818]
Coordinates
chr3:121705460-121706266:+
Coord C1 exon
chr3:121705460-121705620
Coord A exon
chr3:121705621-121706126
Coord C2 exon
chr3:121706127-121706266
Length
506 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
CTGAGTATTTTATCCCATAGGAA
3' ss Score
8.39
Exon sequences
Seq C1 exon
GTAACAGTTAACCTCTTTCATATGCAGCAGCTACAGGCTGCATCCCTTGCCAACAGTTTACAGTCCCTCTGTGACAGTGCCAAACTCTATGATCCAGGTCAGGAGTACAGTGAATTCGTGAAGGCTACAAGCTCAAGTGAATTAGAAGAAAAGGTTGATGG
Seq A exon
GTAAGAATTAATGCATAGGAGAAATTATTTCAAACGGGAAAACATTTGCTGAGTTCCTGTCTATGTTTTTATAAGGAAATGTCTTTTCTTACACTGAAATACTAGCTTTAATTTTTTTCAATATTTTCCTATTATTTTGTGAGTTTAAGGAATAGATGAAATATACTTGAGGATGATGCTTTCTATTTTCACACGCTTCTTTGAGTCTTAAAAACTCTTTGGAAGTAGCAAATGATAACCTACATATTTTGAGTATACCAAAAACTTGATCTATACTTTTTACTAATGTTAGATTAGAAAAGTTTAATCATGATATAAATATTAAATATTCTATTGTTATACCTTTTCCATATTCAGCTGTTATAAATACACATTGTCTAAATGCTATATTTCTTTAAAAGAAGTTGAACTATATAACAAAGTTATTAATATTAATGAAGCTTATTCTACATTTATTAAATTAAGAAGTTTACAAGACTGTTAGTGCTGAGTATTTTATCCCATAG
Seq C2 exon
GAATGTAAATAAACAAATGACCAACAGTCCGCAGACATCTGGCTATGAACCTGCTGACTCCTTAGAGGATGTTGCCCGCCTTCCTGACAGCTGTCATAAGCTTGAAGAGGACAGGTGCTCCAACAGTGCAGACATGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039831-Arhgap29:NM_172525:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.264 A=NA C2=0.853
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTTAACCTCTTTCATATGCAGCA
R:
TCATGTCTGCACTGTTGGAGC
Band lengths:
295-801
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: