BtaINT0021741 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012147 | ARRDC1
Description
Bos taurus arrestin domain containing 1 (ARRDC1), mRNA. [Source:RefSeq mRNA;Acc:NM_001080365]
Coordinates
chr11:105542852-105543353:-
Coord C1 exon
chr11:105543199-105543353
Coord A exon
chr11:105543035-105543198
Coord C2 exon
chr11:105542852-105543034
Length
164 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
TTCCCTGCCTTCCTCCCAAGCAA
3' ss Score
6.65
Exon sequences
Seq C1 exon
CCACGGCTCCCACGTCCTTCGAGGGCCCTTTTGGGAAGATTGTACACCAGGTACGGGCCACCATCGACACACCACGTTTTTCCAAGGATCACCAGTGCAGCCGTGTCTTCTACATCTTGAGCCCCCTGAACCTGAACAGCATCCCAGACATCGAG
Seq A exon
GTGAGGCTGGGGCAGTGGCCTCCTGGGTGGCTCCCACACTTGTGCAATGCCCTGTCCCCAGCACAGGTGAGGCGGCCTGTGGAAGCAGCAGCCTCAGTTCTGAGCTGACCCAGGGATCCTGTCTGCTCACACCCGCCAAACCCCTTCCCTGCCTTCCTCCCAAG
Seq C2 exon
CAACCCAATGTGGCCTCCACCACCAAGAAGTTCTCCTACAAGCTGGTGAAGACGGGCAGCGTGGTCCTCACGGCCAGCACCGACCTCCGAGGCTATGTGGTAGGGCAGGTGCTGAGGCTGCAGGCAGACATTGAGAACCAGTCAGGCAAGGACACCAGCCCGGTGGTGGCCAGTCTGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012147:ENSBTAT00000032616:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0033924=Arrestin_N=PD(33.8=86.5)
A:
NA
C2:
PF0275217=Arrestin_C=PU(35.2=72.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATCGACACACCACGTTTT
R:
TCCTTGCCTGACTGGTTCTCA
Band lengths:
248-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development