HsaINT0012823 @ hg19
Intron Retention
Gene
ENSG00000197070 | ARRDC1
Description
arrestin domain containing 1 [Source:HGNC Symbol;Acc:28633]
Coordinates
chr9:140508067-140508666:+
Coord C1 exon
chr9:140508067-140508221
Coord A exon
chr9:140508222-140508483
Coord C2 exon
chr9:140508484-140508666
Length
262 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
TCCCTGGCCCTCCCCCCAAGCAA
3' ss Score
4.15
Exon sequences
Seq C1 exon
CCACTGCACCCACGTCCTTTGAGGGTCCTTTCGGGAAGATCGTGCACCAGGTGAGGGCCGCCATCCACACGCCACGGTTTTCCAAGGATCACAAGTGCAGCCTCGTGTTCTATATCTTGAGCCCCTTGAACCTGAACAGCATCCCAGACATTGAG
Seq A exon
GTGAGGATGGCACAGTGACCTCCTTGGTGGGTCCCCACCCTCATGGAGGCTGGGGAAGAGCTGGGCAGGCACTGCTTCATCCCAGCGTCCTGTCCCCAGCTGAGGTGAGGGGGGCCAGGGTCTGGAGGCAGTGGCCTCTTTGCCCTGAGCTGACTGCTGATGTCCAGGGGCAGGGCGTGGCAGGGCTGAGGGGCCTGTCCCAATGCCACAGGGATCCAGCCTGCGCACACCTGCTAAGCCCCTCCCTGGCCCTCCCCCCAAG
Seq C2 exon
CAACCCAACGTGGCCTCTGCCACCAAGAAGTTCTCCTACAAGCTGGTGAAGACGGGCAGCGTGGTCCTCACAGCCAGCACTGATCTCCGCGGCTATGTGGTGGGGCAGGCACTGCAGCTGCATGCCGACGTTGAGAACCAGTCAGGCAAGGACACCAGCCCTGTGGTGGCCAGTCTGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197070-ARRDC1:NM_152285:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.010
Domain overlap (PFAM):
C1:
PF0033924=Arrestin_N=PD(33.8=86.5),PF0275217=Arrestin_C=PU(3.6=7.7)
A:
NA
C2:
PF0275217=Arrestin_C=PU(35.2=72.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCCTTTGAGGGTCCTTTCG
R:
TCCTTGCCTGACTGGTTCTCA
Band lengths:
295-557
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)