RnoINT0021394 @ rn6
Intron Retention
Gene
ENSRNOG00000007622 | Arrdc1
Description
arrestin domain containing 1 [Source:RGD Symbol;Acc:1309961]
Coordinates
chr3:2131080-2131568:-
Coord C1 exon
chr3:2131414-2131568
Coord A exon
chr3:2131263-2131413
Coord C2 exon
chr3:2131080-2131262
Length
151 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
TCCCTTCCTTTCCCTTCAAGCAA
3' ss Score
8.67
Exon sequences
Seq C1 exon
CCACAGCACCCACATCTTTCGAGGGCCCCTTTGGGAAGATTGTGCACCAGGTGAGGGCGTCCATCGACACTCCACGTTTTTCCAAGGATCACAAATGCAGCCTCGTGTTCTACATCCTGAGCCCCTTGAACCTGAACAGCATCCCAGATATCGAG
Seq A exon
GTAAGGACGGAACAGGGGCTTCCTTGGCTGCCTTCGGCCTTCTCAGGCCAGGCAGCCAGGCCCTGTCTTAATCTGGTTGCTGGTGTCTAGGGCAGTCTGAGGGTCTTGTCTGTGCTCGCTTGATAAACTCTTCCCTTCCTTTCCCTTCAAG
Seq C2 exon
CAACCCAATGTGGCCTCTACTACCAAGAAGTTCTCCTATAAGCTGGTGAAGACCGGCAGTGTGGTTCTCACAGCTAGCACGGACCTTCGTGGCTATGTGGTAGGACAGGTGCTGCGGCTGCAGGCTGACATTGAGAACCAGTCGGGCAAGGACACCAGCCCTGTGGTGGCCAGCTTGCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007622:ENSRNOT00000010169:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0033924=Arrestin_N=PD(33.8=86.5)
A:
NA
C2:
PF0275217=Arrestin_C=PU(35.2=72.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCATCGACACTCCACGTTT
R:
TTGCCCGACTGGTTCTCAATG
Band lengths:
246-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]