GgaINT0124233 @ galGal3
Intron Retention
Gene
ENSGALG00000008475 | ARRDC1
Description
NA
Coordinates
chr17:2384128-2384948:+
Coord C1 exon
chr17:2384128-2384282
Coord A exon
chr17:2384283-2384765
Coord C2 exon
chr17:2384766-2384948
Length
483 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
CTGTCTCTACTGTTTTGCAGCAG
3' ss Score
8.72
Exon sequences
Seq C1 exon
CCTCTGCTCCTACATCATTTGAAGGTCCTTTTGGCAAGGTTCTCCATCAGGTGAAGGCTGTGATAGACACACCTCGCTTCTCCAAGGACTACAAGTGCAACAAGATCTTTTATGTTCTCTGCCCTCTCAACTTGAATGACATCCTTGATATTGAG
Seq A exon
GTAGGAACAAGGATGAGTTTAGCTGGGAATCATCAAGGCACTGCTGCTTCTCCTTGTCATAAGTGATATGTGGGAGCAATTGTGTGTTTGGATTATTCTCTAACTGTGTGTCCTGCTGGTGCAAGAGCAGTCTGAGGACTCCTGCTATTTGATCTGCCTTGCCATCAGTCCCCACTCAGTGATTTTTTTGACTCCTCCACACATTGGAAGATTTAGTGAATTTTGAACATGCTGTGTGAGGCATCTCTCTCAGCCAGTAGCACCAGGTGCTTGTAGAGACCTGGCTTTGGGGAACTTGAAGGAAAGAGATGCTAACAGGACAGGAAAAACTGGGGGGAAGGAGGAGAGAGGCCTGTTGTCTGTGTTACTGGTTCTTTGTGGCCTCTTATAGTAGATATTGCTGCTTGCTTGTTTTGGGTCTGAGTGTTTTCCTGGAGGCTCTCTGACATTCTTGGGTCACCATCTGTCTCTACTGTTTTGCAG
Seq C2 exon
CAGCCCAACACTATGTCCGTTACCAAGAAGTTCAACTACAAGCTCGTGAAAAGTGGCAATGTTATCCTGACAGCCACCTCAGATCTGAAGGGGTACATTGTGGGGCAAGTGATCCAGCTCCGCACAGACATAGAGAACAAGTCAGGTCGGGACACCGGGGCTGTGGTAGCCAGCCTACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008475:ENSGALT00000013811:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0033924=Arrestin_N=PD(33.8=86.5)
A:
NA
C2:
PF0275217=Arrestin_C=PU(35.2=72.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCCTACATCATTTGAAGGTCC
R:
CTGGAGTAGGCTGGCTACCAC
Band lengths:
334-817
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]