MmuINT0019322 @ mm9
Intron Retention
Gene
ENSMUSG00000026972 | Arrdc1
Description
arrestin domain containing 1 [Source:MGI Symbol;Acc:MGI:2446136]
Coordinates
chr2:24782103-24782552:-
Coord C1 exon
chr2:24782398-24782552
Coord A exon
chr2:24782248-24782397
Coord C2 exon
chr2:24782103-24782247
Length
150 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
TTTCCCCTTTTCTCTTCAAGCAA
3' ss Score
9.41
Exon sequences
Seq C1 exon
CCACAGCACCCACATCTTTTGAGGGACCCTTTGGGAAGATTGTACACCAGGTGAGGGCGTCCATCGACACTCCACGTTTTTCCAAGGATCACAAATGTAGCCTCGTGTTCTACATCCTGAGCCCCTTGAACCTGAACAGCATCCCAGATATTGAG
Seq A exon
GTAAGGATGGAACAGAGAGGCTTCCTCGGTTGCCTTCAACCTTCTTGGACCAGGCAACCAAGCCCTGTCTTAAGCTGCTTGCTGCTGTCTAGAGCAGCCTGAGTCTTGTCTGTGCTCGTTTGATAAACTCTTTCCCCTTTTCTCTTCAAG
Seq C2 exon
CAACCCAATGTGGCCTCCACTACCAAGAAGTTCTCCTATAAGCTGGTGAAGACTGGCAATGTGGTTCTCACAGCTAGCACTGACCTTCGTGGCTATGTGGTGGGACAGGTGCTGCGGCTGCAGGCTGACATTGAGAACCAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026972-Arrdc1:NR_027876:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0033924=Arrestin_N=PD(33.8=86.5)
A:
NA
C2:
PF0275217=Arrestin_C=PU(35.2=72.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTGTACACCAGGTGAGGGC
R:
GGTTCTCAATGTCAGCCTGCA
Band lengths:
257-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: