BtaINT0022000 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008973 | ASB6
Description
Bos taurus ankyrin repeat and SOCS box containing 6 (ASB6), mRNA. [Source:RefSeq mRNA;Acc:NM_001205661]
Coordinates
chr11:100054720-100055030:-
Coord C1 exon
chr11:100054924-100055030
Coord A exon
chr11:100054829-100054923
Coord C2 exon
chr11:100054720-100054828
Length
95 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGA
5' ss Score
9.84
3' ss Seq
GTTGTGCTTTCTCGGCTCAGATC
3' ss Score
7.34
Exon sequences
Seq C1 exon
ACCCCGTCACCTACTACACGGCACTGCATATCGCCGTCCTGCGAAACCAGCCTGACATGGTGGAGCTGCTGGTGCGCCACGGGGCCGACATCAACCGGAGGGACCGG
Seq A exon
GTAAGAGCCAGCCCTGCTCTGAAGGAGGGATGTGGCCGGGGCCCTGAGCCGCTCACAGGCCCCAGGGCCAACCTGGTTGTGCTTTCTCGGCTCAG
Seq C2 exon
ATCCACGAGAGCAGCCCCCTGGACCTAGCCAGCGAGGAGCCGGAGCGCCTGCCCTGCCTGCAACGCCTCCTGGACCTCGGAGCAGACGTCAATGCGGCCGACAAGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008973:ENSBTAT00000011810:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.189
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(37.0=94.4),PF127962=Ank_2=PU(0.1=0.0)
A:
NA
C2:
PF127962=Ank_2=FE(48.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGCATATCGCCGTCCTG
R:
ATTGACGTCTGCTCCGAGGTC
Band lengths:
179-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development