GgaINT0125884 @ galGal4
Intron Retention
Gene
ENSGALG00000004378 | ASB6
Description
ankyrin repeat and SOCS box protein 6 [Source:RefSeq peptide;Acc:NP_001025859]
Coordinates
chr17:5649549-5650176:-
Coord C1 exon
chr17:5650070-5650176
Coord A exon
chr17:5649658-5650069
Coord C2 exon
chr17:5649549-5649657
Length
412 bp
Sequences
Splice sites
5' ss Seq
CGGGTACAG
5' ss Score
4.22
3' ss Seq
TTTCCTCTTGCCCTGTACAGATC
3' ss Score
10.93
Exon sequences
Seq C1 exon
ACCCGGTTACCTACTACACCCCGCTGCACATTGCAGTGCTTCGCAACCAGCCTGACATGGTGGAGCTCCTGGCACGCCACGGGGCCGACATCAACCGCAGAGACCGG
Seq A exon
GTACAGAATTGACTGCTTGGACATGGACATGCTCCAGCTCCCTTGGGGCTGCAAAGGACCATCGTGTGGGGTCAGCCCTCTCTGCTGCCCCTTCCGGGGCCTGCTGCATGCCACCTGCCATCAGTGGCCTCCCAAGCTGCTGCCTGCACTGCTCCAGTGCTGTGGCAAAAGCTGAGGCTGCCTTTGGCCAAGCAGACCTGCCTCTGCTGTGGAGTGTGTGGTGGGAGGAAGCTGGGGTAGATGGATCTCTCCCTGTAGGCATAGTGACATTGGGGAGGGGGCTGTCTTGCTTTTGGGGACAGAATGAATTATATGCTGTCACGTTGGCCATGATGAAGCCCCATCAGTGATTCTCCAGAGGTACTCATAAATAGTCCTTAATACGTGTGGATTTTCCTCTTGCCCTGTACAG
Seq C2 exon
ATCCATGAGAGCAGTCCCCTTGATCTGGCCAGTGAGGAGCCCGAGCGGCTGCCATGCCTCCAGAGGCTGCTTCAGCTTGGGGCCGATGTCAACGCAGCTGACAAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004378:ENSGALT00000006983:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.135
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(34.7=94.4),PF127962=Ank_2=PU(0.1=0.0)
A:
NA
C2:
PF127962=Ank_2=FE(46.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGGTTACCTACTACACCCC
R:
CAGTTTTGTCAGCTGCGTTGA
Band lengths:
215-627
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]