HsaINT0013199 @ hg38
Intron Retention
Gene
ENSG00000148331 | ASB6
Description
ankyrin repeat and SOCS box containing 6 [Source:HGNC Symbol;Acc:HGNC:17181]
Coordinates
chr9:129639202-129639508:-
Coord C1 exon
chr9:129639402-129639508
Coord A exon
chr9:129639311-129639401
Coord C2 exon
chr9:129639202-129639310
Length
91 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
3' ss Seq
GCTGTGCTTCCTTGGCTCAGATC
3' ss Score
6.74
Exon sequences
Seq C1 exon
ACCCAGTCACCTACTACACGGCCTTGCACATCGCCGTCCTGCGGAACCAGCCGGACATGGTGGAGCTGCTGGTGCATCACGGGGCCGACGTTAATCGGAGGGACCGG
Seq A exon
GTAAGTGCCAGGTCCAGCTTGCTTTGAAGCAGGGTTGGGCAGGGGCCTGAGCAGCTTCCCAAGCCAACCTGGCTGTGCTTCCTTGGCTCAG
Seq C2 exon
ATCCACGAGAGTAGCCCCTTGGACCTGGCCAGCGAGGAGCCTGAGCGCCTGCCCTGCCTGCAGCGCCTCCTGGACCTTGGAGCTGATGTCAATGCCGCTGACAAGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148331:ENST00000277458:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=NA C2=0.234
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(35.8=94.4),PF127962=Ank_2=PU(0.1=0.0)
A:
NA
C2:
PF127962=Ank_2=FE(48.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTACACGGCCTTGCACATC
R:
ATCAGCTCCAAGGTCCAGGAG
Band lengths:
183-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development