DreINT0034019 @ danRer10
Intron Retention
Gene
ENSDARG00000007125 | asb6
Description
ankyrin repeat and SOCS box containing 6 [Source:ZFIN;Acc:ZDB-GENE-050522-338]
Coordinates
chr8:6864456-6866890:-
Coord C1 exon
chr8:6866784-6866890
Coord A exon
chr8:6864565-6866783
Coord C2 exon
chr8:6864456-6864564
Length
2219 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
3' ss Seq
TGTGTTTTACTTTGCATTAGATT
3' ss Score
7.31
Exon sequences
Seq C1 exon
ACCCTGTATCGTACTACAACCCTTTACACATCGCAGTACTGAGAAACAAACCAGACATGGTGCGAATGTTGATCTCGAGTGGAGCTGATATTGACAAAAGAGACAGG
Seq A exon
GTGAGAATTAATACATTTTATTTGTGGTGTTTAATGATTAATCCTGACCAAAATGTACAAAATGTAAGTTTTTATTGATATACTGCGTGTGCATACTGTGTATATTCATGATAAATTTATAAATGCACACACATACAATTTAAGAATATTTATTATATATTATTATTTGTAAATGTATAATATATTATATCAATATGTTAAAATGTATATACTATTATAATATTCACATTTCAATTTAGAAATATTTAGATATTTAGGAAATACAGGGTTCAACACTAAGGATTTTTTCTACTGGCCCGATCAGACCAGTGGTTGAGATTTTTTACTTGCCCTGCACAAAATTTTCACTGGCCCCACCAAAAAAAAAAAGTTAATAGCTATTACTTAGACACGTACAGTTAAAGTCAGAATTATATATTTATTTTATTTTATTTATTTTTATTTATTTATTTATTTATTTAATATTTCCCAAATGATTTTTACCAGAGCTAGGAATCTTTCACAGCATATCTGATAACATGTTTTCTTCTGGAGAAAGTCTAAATTGCTTTATTTCGGCTATAAAAAAAACAAAAAATAAATAAAAAACATTTTAAGCACATAATTATTAGCCCCTTTAAGCTTCCTTTTTTTTTTTCTCTCTAGTCTGCAGAACAAACCATCATTACACAATAACTTGCCTAATTACCCTAACCGTCCTAATAGAGCTGCACGATTCTGGCTAAAATGAGAATCGCGATTTTTTTGCTTAAAATAAAGATCACGATTTTCTCGATTCTGTAGATGTAAAATAAAGGTATGGTAAAAACAAACATATGGCACAACATCGATAATAATATTATGTGTAGGTCTACTGGTTTTTATAAAAAATTATTTTCTACTTACTGATGTTGAATTATTATGTTTAAGATATATGCTTGCATTCTGTCATATTAGACAATTTTATTGACTGGTAAAATCAGACATTTGCCATTATCAGATTATATTCAACAATATATAGGCTAGAGTAGTTATACTGACATTGTAAACATTTATTTTCATGCACAACTGTGGGTTCACTATGAAAGAAAAAACATTTCAAATGCTTGCCGTAATCATAATTCTAAAATGCGATATGATCATTTAAATGAAGTGCACACTTTCGGTTTCATTTTGACTGCTAAGCACTTGTTCATACTTCGCGCGCGGCTTCCAAACGATCACTCTGTGCCACAAACAGAACATTATTTACAAATGTATTACATTTTACTCGCAACTTATGCAGGTTCTGTTCACTAAAGTAGACGCGCGCGTCTATTATTAAGTAGAGCGCGCTCGCCCTCTCTATAACGGCTCACGGTCAGCAGCTCACGTCACGTGTGATTTTCCCGGCCGCGAAAACATCATTATATAAAGACAAAAATGACATAATTAGGTGAATTATACCTTACAAGTACATTATGTGACTCATTCAACTTTATTTGGAGGTGTCACTGAGCAACTTGTGTGAAACAATGAAAAGACTCGTGCAGCCGCCTTTTCTTCTCTTCTGAACTTGAAACATGATTGACAGAATCGTAGAAATGCTGGATTAAGATCGTCTAGGGGGTCGAATCGAGATCGCGATCTTTTAACAATTAATTGTGCAACTCTACGTCCTAGTTACCCTAATTAACCTAGGTAAGCCTTTAAATTTCATTTTAAGCTGTATAGAAGTGTCTTGAAAAATATCTAGTCAAATATTATTTACTGTCATCATGGCAAAGATAAAATAAATCAGTTATTAGAAATGAGTTATTAAAACTATTATGTTTAGAAATGTGTTGAACAAAATCTGCTCTCTGTTAAACAGAAATTGGGGAAAAAAATAAACTGGGTCTAATAATTCAGGGGGGCTAATAATTCTGACTTCAACTGTAAATTGTAATATATAAATATTCAAATCAATTTAGTTCAAAATGGCACTTTACCTTATAAAGTTAAAATAAAAATTAAGTACCACCAGAATTTTAAGCAGAAGCAAACAAACTATTAGTCTCATGTACTACTGTAGATTGCAAATTATATTTTAATGCGATGTATTGGTAATTCAACCCTTATCACACCACATTTAATTCAATTGTAATATACAAGCTGTTTCTGTGTGCTTGATTTCTCTATTTTTGTTGACTGCTGTATGTTATATAAAGTAGCACAATAGTCATGTATTGATGCATTCAGTGTGTTTTACTTTGCATTAG
Seq C2 exon
ATTCATGAAAGCAGCCCTATTGACTTGGCCAGTGAGGAGGCTGATAAGCTGCCGTGTCTCCGTGTGCTTCTGGATTTTGGTGCTGATGTGAATGCAAAAGACAAGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007125:ENSDART00000014915:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.054
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(37.8=94.4),PF127962=Ank_2=PU(6.6=11.1)
A:
NA
C2:
PF127962=Ank_2=FE(59.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]