RnoINT0021717 @ rn6
Intron Retention
Gene
ENSRNOG00000024786 | Asb6
Description
ankyrin repeat and SOCS box-containing 6 [Source:RGD Symbol;Acc:1308445]
Coordinates
chr3:9661861-9662166:-
Coord C1 exon
chr3:9662060-9662166
Coord A exon
chr3:9661970-9662059
Coord C2 exon
chr3:9661861-9661969
Length
90 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
3' ss Seq
TGCTATCCCCTTTGGTTCAGATC
3' ss Score
7.8
Exon sequences
Seq C1 exon
ACCCTGTCACCTACTACACAGCCCTGCACATTGCTGTCCTGAGAAACCAGCCTGACATGGTGGAGCTGCTGGTGCGCCACGGGGCTGATATCAACAGGAGGGACCGG
Seq A exon
GTAAGGGTCAGCTCCAATCTTGGGCATGATTAGTAGGTTCACCAGCGAAAGCCACCCCAGGCAACATGGCTGCTATCCCCTTTGGTTCAG
Seq C2 exon
ATCCACGAGAGCAGCCCCTTGGATCTGGCCAGTGAGGAACCTGAACGCCTGCCCTGCCTGCAGCGCCTCTTGGATCTTGGAGCAGATGTCAACGCAGCAGACAAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024786:ENSRNOT00000034927:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.189
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(58.6=94.4),PF127962=Ank_2=PU(1.3=2.8)
A:
NA
C2:
PF127962=Ank_2=FE(46.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCTGAGAAACCAGCCTGA
R:
GCGTTGACATCTGCTCCAAGA
Band lengths:
168-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]