MmuINT0019644 @ mm10
Intron Retention
Gene
ENSMUSG00000039483 | Asb6
Description
ankyrin repeat and SOCS box-containing 6 [Source:MGI Symbol;Acc:MGI:1919573]
Coordinates
chr2:30825452-30825761:-
Coord C1 exon
chr2:30825655-30825761
Coord A exon
chr2:30825561-30825654
Coord C2 exon
chr2:30825452-30825560
Length
94 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
3' ss Seq
TGCTGTCCCCTTTGGCTCAGATC
3' ss Score
7.1
Exon sequences
Seq C1 exon
ACCCTGTTACCTACTACACAGCCCTGCACATTGCTGTCCTGAGAAACCAGCCTGACATGGTTGAGCTGCTGGTGCGCCACGGGGCTGACATCAACAGGAGGGACCGG
Seq A exon
GTAAGGGCCAGCTCCAGGCTTGGGCATGTTTGGTAAGTTTACCAAGGAGCCTTGCAGGCTCCGGGCAACATAGCTGCTGTCCCCTTTGGCTCAG
Seq C2 exon
ATCCATGAGAGCAGCCCCTTGGATCTGGCCAGCGAGGAACCCGAACGCCTGCCCTGCCTGCAGCGCCTCTTGGATCTTGGAGCAGATGTCAATGCAGCTGACAAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039483:ENSMUST00000041726:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.189
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(37.0=94.4),PF127962=Ank_2=PU(0.1=0.0)
A:
NA
C2:
PF127962=Ank_2=FE(41.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGAGAAACCAGCCTGACA
R:
AGCTGCATTGACATCTGCTCC
Band lengths:
170-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types