BtaINT0022546 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005863 | ATF7
Description
activating transcription factor 7 [Source:HGNC Symbol;Acc:HGNC:792]
Coordinates
chr5:26660417-26661159:+
Coord C1 exon
chr5:26660417-26660516
Coord A exon
chr5:26660517-26661045
Coord C2 exon
chr5:26661046-26661159
Length
529 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
TCTTCCTTTTCTTGATCTAGCTG
3' ss Score
9.01
Exon sequences
Seq C1 exon
GTCTCCCACCGGCTCCCTCCCTCTCGTCATGCATCTTGCTAATGGACAGACCATGCCTGTGCTGCCAGGGCCTCCAGTACAGATGCCTTCTGTTATATCG
Seq A exon
GTGAGTTCTGTAGTTGGGGCAGCCAACCCTACCAACACACGAACCCCTCCCTTCCACCTGAATGCTCATAAACACACATGAGCCCCAGGGAAACATGGGCTCTGGTCTGTATTAGTTGAGCATGGCGGCCTGCCCATACTTTTCACTAACCTCTGCCAATCCAGCACTATGGAACACTAGACAAAGGCTCATCTGGACCGTTGGCTCCTGGTCTAGGAATTGATCTTGCCAGCCTGCTGATTGGCTTATTTCACTTGGCACTAAGTACCTCACAAATTGCCCACCACTTTCCTCAAGACACAGTCTCAGCCTTTCCCATAGAAACTGTCACAGCACTGAAGGATTAGATCCCCTATCCTGTGGTGCTCCATGAGGGAAGGTATTTCCCAGACTTTCTGCATGCCCCATGGACAGGGTGCATAGAACAGGCCCTAATGTGCCAGCCTCAAAAGCACTTCATTTGGGGAAGTTGTTGCCCCACTAATAGCATTATGTCCCCTTCTGATTTTTCTTCCTTTTCTTGATCTAG
Seq C2 exon
CTGGCCAGACCTGTGTCTATGGTGCCCAACATTCCTGGTATCCCTGGCCCACCAGTTAACAGCAGTGGTTCCATTTCTCCCTCTGGCCACCCTATGCCATCAGAAGCCAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005863:ENSBTAT00000007704:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.921
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCCACCGGCTCCCTC
R:
GCTTCTGATGGCATAGGGTGG
Band lengths:
206-735
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]