GgaINT0002543 @ galGal3
Intron Retention
Gene
ENSGALG00000003038 | ATF7
Description
NA
Coordinates
chrUn_random:38351298-38352576:+
Coord C1 exon
chrUn_random:38351298-38351397
Coord A exon
chrUn_random:38351398-38352462
Coord C2 exon
chrUn_random:38352463-38352576
Length
1065 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAGG
5' ss Score
10.48
3' ss Seq
CGTCGGTTCCTCCCCGTCAGCTG
3' ss Score
6.62
Exon sequences
Seq C1 exon
GTCGCCCACGGGTTCCCTTCCGCTCGTCGTGCAGCTGCCAAACGGGCAGACCATGCCTGTCCTGCCCGGCCCCCCCATGCAGATGCCGTCTGTGATATCG
Seq A exon
GTAAGGGAAGCGCAGCACGGCTCTGCCAGGCGGGGGGGGGGGGGGGGGAAGGGATGGCTCTTCCATTCTGCAAAAGTTAAAACTTAAACCCCCCCCCCCCGCGTGAGAAAAGGCGTGAGTAGGAGAGGAGGGGAGGGTGGGCTGGGGGGGGGGGCGGGGGCAGCTCTGGCAGGGCGGTAATAACGCGGTAATAACGCGGCGGTCGCAGCAGAGGGCAGCCGGTGTGGGGGAAAAGCGAAGCCGTGCAGCCGGGCGGCTCACAGCGCGGATCGGGGCTGGGAGCTGCAGGAGCGCCGCTTACCGCCCCGTTCTGCGCTCGGAGCCATCCGAGCTTGCAGGGAACGCGTTGCGCTGTGCGGGCAGCAAAGCGCCCCCGGCCTCACCGGAGCGCCGTGCAAATAAATGTTCTCCTCCCGCGCTGGGCTTTTTGCACGCAGGGAATTGCCCGTGGGGCAGAGCTCAGGAGCAGCTCCGAGCCCCCCCGAGAGCCTCAGCGCTCTCCCCAGCCCCCCCCCCAGGCACGGATCCTGCTGTGCGTTTGGCTTCGGAGCGAATCGCAGCCAAATCTGCCCCGGGTTGCGGGCAGGTCGGTGTCAGACAGGCACAGCCGCGGGCTGCAGATCTGCACCGCGCTGCCGGCTGAGGGCACGGCCTGCGGCTCAGTGCTCTGCAACAGCGGACCTGAGCGGCGTGCAAACGCAAGTGCAGGTTCTGTTGTCCCTCTGGCGAGGGCAGAGCTGCCCTTGGCTCAGCAGGACGAGACGCTTCCACGCGCCCCCGGCGCTGCTCAGCCGTGCGGCGCTGCCGAGAATCGGAGCGCTCCGCTCCCGCCCGGGATGGGGAGAGGAGGGGGGGAACTGCGGGGCTGCCGCGGCCGGGCAATCCTTCACCAGCAGCCGTGGCCACCGAAGGGGCGGCTGAGCCCCGGGCTGACAGCGGCGCTGATGGATGGCGGCAGTTAAAGGCCGGGATGTGTCGGGGCTGATGAATGCGCTCGGTCGGGGAATTATCGCGGCGCGCGTTGGCACCGCGGCTCTTAACGCTGCGTCGGTTCCTCCCCGTCAG
Seq C2 exon
CTGGCCCGGCCCGTCTCCATCGTGCCCAACATTCCCGGCATCCCCGGGCCGCCCAGCAGCAGCAGCGGCTCCGTTTCCCCTCCGGGTCTCCCCGTGCACTCGGAAGCCAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003038:ENSGALT00000004807:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.895
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCACGGGTTCCCTTCC
R:
CATTTTGGCTTCCGAGTGCAC
Band lengths:
211-1276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]