MmuINT0020290 @ mm9
Intron Retention
Gene
ENSMUSG00000052414 | Atf7
Description
activating transcription factor 7 [Source:MGI Symbol;Acc:MGI:2443472]
Coordinates
chr15:102377585-102378303:-
Coord C1 exon
chr15:102378204-102378303
Coord A exon
chr15:102377699-102378203
Coord C2 exon
chr15:102377585-102377698
Length
505 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGC
5' ss Score
9.1
3' ss Seq
TGATCCTTCTCTTGATTTAGCTG
3' ss Score
8.02
Exon sequences
Seq C1 exon
ATCTCCTACTGGCTCCCTCCCTCTCGTCATGCATCTTGCTAATGGACAGACCATGCCTATGTTGCCAGGGCCTCCAGTACAGATGCCTTCTGTTATTTCG
Seq A exon
GTGAGCTTTGTAGTTGAGCAGCCAAACCTACCAGCACACCGATTCCTCCTTTCCACCTGAATGATCATAACCCCAAGACCCCAGGGATATGTGGGCCTGGACTGTATTAGTTGTGTGTGGCAATGTGCCCAAACTCTTCACTAACCTCTGCCAGTGCAACACTGTGAAGCACTAGACAAAGCTTCATCTGGACAGTTGGCTCCTAGTCAAGGAGTTGATCTTGCCAACCTGCTGACTGGTTGACTTCACTCACCCCATAGCTTCTCCTGCACTGCTTACCCCTTTCCTGAAGATACACTCTCAGTCTTTCCCACAGAAAAGGACTGCAGAATGAGGTTCCTTACTCTGTGGTACTCCTTAGGAAAGATGATTTCCCAGGCTATCCCTGCTTGTCTTGTGAGCAGGTTACACAGAACAGACCCTGACATACCAATCTCAAAAACACTTGATTTGGGGAAAACAAATGCTACCATATCTCCTGGTTTTGATCCTTCTCTTGATTTAG
Seq C2 exon
CTGGCCAGACCTGTGTCCATGGTGCCCAACATTCCTGGTATACCTGGCCCACCGGTTAACAACAGTGGCTCCATTTCTCCCTCTGGCCACCCTATGCCGTCAGAAGCCAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052414-Atf7:NM_146065:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.974
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTCCTACTGGCTCCCTCCC
R:
CATTTTGGCTTCTGACGGCAT
Band lengths:
214-719
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: