RnoINT0022349 @ rn6
Intron Retention
Gene
ENSRNOG00000015269 | Atf7
Description
activating transcription factor 7 [Source:RGD Symbol;Acc:1304940]
Coordinates
chr7:144146994-144147714:-
Coord C1 exon
chr7:144147615-144147714
Coord A exon
chr7:144147108-144147614
Coord C2 exon
chr7:144146994-144147107
Length
507 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGC
5' ss Score
9.1
3' ss Seq
TGGTCCTTCTCTTGATTTAGCTG
3' ss Score
7.58
Exon sequences
Seq C1 exon
ATCTCCTACTGGCTCCCTCCCTCTCGTCATGCATCTTGCTAATGGACAGACCATGCCAATGCTGCCAGGGCCTCCAGTACAGATGCCTTCTGTTATTTCG
Seq A exon
GTGAGCTTTATAGTTGGGGTAGCCAAATCTACCAGCACACTGATTCCTCTCTTCCACCTGAATGATCATAACCACAGGACCCCCAGGGATATGTGGGCCTGGACTGTATTAGTTGTGTGTGGCAGTGTGCCCAAACTCTTCACTAACCTCTGCCAGTGCAACACTGTGAAGCACTAGACAAAGATTCATCTGGACAGTTGGCTTCTAGTCAAGGGGTTATTTTGCCAACCTGCTGACTGGTTGACTTCACTCAGCCCATAGCTTCTCCTGCACCGCTCACCTCTTTCCTGAAGACACACCCTCAGTCTTTCCCACAGAAAAGGATTGAAGAAGGAGGTTCCTTACTCTGTGGCACTCCTTAGGAAAGATATTTCCCAGGCTATCTCTGCATGTCCTGTGTGAGCAGATTATACAGAACAGGCCCTGACATGCCACTCTAAAAAACACTTCATTTGGGGAAAACCAATACTACTATGTCTCCTGATTTTGGTCCTTCTCTTGATTTAG
Seq C2 exon
CTGGCCAGACCTGTTTCCATGGTGCCCAACATTCCTGGTATACCTGGCCCACCAGTTAACAATAGTGGCTCTATTTCTCCCTCTGGCCACCCTATGCCGTCAGAAGCCAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015269:ENSRNOT00000020527:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.947
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTCCTACTGGCTCCCTCCC
R:
CATTTTGGCTTCTGACGGCAT
Band lengths:
214-721
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]