HsaINT0013828 @ hg19
Intron Retention
Gene
ENSG00000170653 | ATF7
Description
activating transcription factor 7 [Source:HGNC Symbol;Acc:792]
Coordinates
chr12:53926294-53927043:-
Coord C1 exon
chr12:53926944-53927043
Coord A exon
chr12:53926408-53926943
Coord C2 exon
chr12:53926294-53926407
Length
536 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGC
5' ss Score
9.1
3' ss Seq
TTTTCCTTCTCTCGATCCAGCTG
3' ss Score
10.22
Exon sequences
Seq C1 exon
GTCTCCCACTGGCTCCCTCCCTCTTGTCATGCATCTTGCTAATGGACAGACCATGCCTGTGTTGCCAGGGCCTCCAGTACAGATGCCGTCTGTTATATCG
Seq A exon
GTGAGCTCTGTAGTTGGGGCAGCCAACCCTACCAACATGGTAATCCTTCCCTTCCACCTGAATGGTCATAAAATACACATGAGCCCCAGGGAAATGTGGGCTCTGATCTATATTAGCTGAGCATGGCAGCCTGCCTAAACTCTTCACTAACCTCTGCCAATCCAGCACTATGGAACACTAGATAAAGACTCATCTGGACAATTGGCTCCTGGTCTAGGAATTGATCTTGCCAGCCCACTGATTAGTTGCTTTCACTTGGCACGTAGCACCTCCCAAATTGCCCAACAATTTCCTCAAGATAACAGCCCCAACCCTTCCCACAGAAATTGCCCCAACACTGAAGGATTAAATTCCCTACTCTGGTGCTCCATGGAGAAAGGTATTTCCCAGGCTGTCCCTGCACGCCCTATGGGCACATTGCACACAACAGGCCCTGATGTGCCAATCTCAAAAGCGCTTCATTTTAGGGAAACTGTTGCCCCACCGATGGTATTATGTTCCCTTCTCTTTTTTTTTTTTTCCTTCTCTCGATCCAG
Seq C2 exon
CTGGCCAGACCTGTGTCCATGGTGCCCAACATTCCTGGTATCCCTGGCCCACCAGTTAACAGTAGTGGCTCCATTTCTCCCTCTGGCCACCCTATACCATCAGAAGCCAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170653-ATF7:NM_001130059:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.934
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCCCACTGGCTCCCTC
R:
CATCTTGGCTTCTGATGGTATAGGG
Band lengths:
214-750
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)