DreINT0034528 @ danRer10
Intron Retention
Gene
ENSDARG00000011298 | atf7a
Description
activating transcription factor 7a [Source:ZFIN;Acc:ZDB-GENE-050721-2]
Coordinates
chr23:27529210-27531716:-
Coord C1 exon
chr23:27531623-27531716
Coord A exon
chr23:27529330-27531622
Coord C2 exon
chr23:27529210-27529329
Length
2293 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
3' ss Seq
CATTTGGCCCTGTGTTGTAGTTG
3' ss Score
5.65
Exon sequences
Seq C1 exon
GTCTCCAACAGTGCCATACCCAATGATGATGCTTCCCAATGGTCAAACGGTTCCTGTGCTTCCTGGTCCTATGCAAATGCCCTCTGTAATATCA
Seq A exon
GTAAGTCTGAAATGCAAATATGGACTCTCACAATTTAATATGATCAATTTTAAGGCATATATTAATCAGTGGCATGGAAATGGCTGAGCATCCACTGTAAAACACTGTAAACATCAGTTTTATTCCTCACTATTGAATTAATATAGCACATCAGGGAATATATAGGGGAAAATATAGTGAAGTACTAAGCAATGAGTCCAATTATCATCATTTGCTCAACAAACTATAAAGCTAAAATAATTGTAAGTATAATAAGAATGAAAATTTAGCAGATATAAGTTCAAACAACAAACAATATTTTGCAAGCTAAAGCTAAATATTAAAACTTAAAAACTAGACTTCAAAACTAAAATTAAAAATGAAAAGGATAATATAACCAGGGCTTGACATTAACACCCGCCAGCCTAGCAAATGCGGGTAGGTCTCAGCTGTGGTGGGTTAGACAGACACCCCCAGTAGCCACCTCGGCTGGTTAAAAACCATTTAAAAAAATGCCAGGGCTGCCTCGTCCCTAAGGATTTGAGTTTTAGTTTAAGACCGTTTGTCAATATGTGCGCGAATGTGTTCTTAGAACTGAAAAGCAGTACAATTAATAACTGTCCGTGCGAGCAAAAGAAACCAGGTGAATACCGAATGAGAGGATGATCAGGCGCACCGTGAGACACTGACATTACTGTCATTGTGAGCAAGGCACAGCTAATGTGATGCGCGCGAGTCCTTAAATGCTCCCATTTCCTTTTGCAAAACAACGCCCGGAAACGCAACTGGTGCGATTGTTTCCCTTTGAAATAGTATGGACAAAAAGTGGTGCTCATGCACCCACAGTCCTGTTGCTTCCAAGAGATCTCCAGATTTTTTGTATGCAGCAGCAGTTGCAGCTTTGCTTTTACTATTCTTTGAACAGATTATTATTAATCCTAATGTTAACCGTGTGCATGTGATCATACTTTCATTATCGCACGCAGAATGTTTTTCACCTGCTTTATTTTGCTTAGAGTTATTTTTGTTGAAATGATTTATTTATCATCTATTACAATAACTTTGCTTTAATAGGAGATTAACTCTCATTTATTTATAGTCAGCTGATGATCTGGGACTTTTAGTCTGGACAAACTACTGTGTATAGTTTTAGATAAATGAGAATATTTTTTATAATTTTGTTTGTTGAATAAAAAGTGTTTGTATACAGCTGTATTTAGCTTGTTTTAACACATTGTTTTAATTTGTGGCAAGGAAATAATAAGTTTGGTGTGGCCAGAGAAAAACTGTAAAATCTTACGCCCCATTCGCATGGGGCGTCAGCGTCAACGCTTCCCATTTACTTTGAATGGGTGATGTCAGGCGTTGCCGAACTGCATTGTGGATCTGTGCTATTTGCAGAAGTTGGGACTTGCTCATCTTTCCAAGCACCGTCGGAAGCGTCAGCCAATCAGATCGCTGTATGCATATACAACAGCTCAGACAGTAACCGATTGCTGACTAATTTTATTGTCTGACGCTGCTATGACGATTGGGTCAGCCCTAACTTCAGACACGCCCTTTGTCAAGCGTTGACTGTGAAGCCCCGTGTGAATGGGGCTTAAGTGTTGAGCCCTAAAAAGTCATGTAAAATAAAAATAAAAATGTTAAGAAGACAATAAAAGATAAGTCATTTAAATACTTTAAAGTATTATAAGTAATCCTGAAATAACACTGGAAAATGTTTTGTTTTCTTTATAATTAAAAGTGTTTCTTTTAAAAAATATATTTCTTTCTATTTTGAGTTAACACTATCATTTCTTCAGTAATTTAAGATATTTTTAAAATTACTTTTCTGTATTTAATTTCTATATTTATTGTCATTATAATATTCCACTGTTATTTCCACATTGTGAACTAATCTTTTGCACTTTCATAATACATTTATGGTTCCTAAAAATACCTTAGACTCCTCGTATAATTTTAAGTTAAAGAAGATAAAATCCATTCTTATTCTAAATACATTTTTGTAATGTGATCCTGGCAGTTTTGTGTTTTTAGTCTTTTCATCTTATTCAAGCTGACATTATTTGAATGTCTGCTACCAAGATGGCACAGACTAAGCTGACTTACTTTAATAGTGGCCAAGTATGTCATATTTTCCCAGTACTAAATTATCATTCACTCCTCCATTTTAAGCACAGTTTCACTTATAGCTCGAATAAATGACCCACTTCTCTTTTAATATGAATTTCCAGAGAGCTGTTTTTTCCGATCTTTGGAGTCATTCATAATTTGCTTCATGAAATGTTTTGCATTTGGCCCTGTGTTGTAG
Seq C2 exon
TTGGCAAGGCCCTTGTGTATGGTGCCCAACATTCCAGGCATCCCCGGGCCTCCACTAGGGGGCAGCAGCAGCGGTTCGTCTTCACCCTCCGGTTACAACCCTCATGCTGAGGCAAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011298:ENSDART00000013563:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.875 A=NA C2=0.775
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]